YRC Public Data Repository - Protein Structure Prediction

Protein:	MNMA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MNMA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|89105578 - gi\|89105578\|ref\|ZP_01178095.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	426.0	[0..8]	[370..34]
MNMA_SHESM - tRNA-specific 2-thiouridylase MnmA OS=Shewanella sp. (strain MR-4) GN=mnmA PE=3 SV=1	426.0	[0..1]	[372..1]
gi\|238789081, gi... - gi\|77972866\|ref\|ZP_00828422.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	425.0	[0..8]	[370..4]
gi\|77635911 - gi\|77635911\|ref\|ZP_00797990.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	425.0	[0..8]	[370..24]
gi\|160875703, gi... - gi\|160875703\|ref\|YP_001555019.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewa...	425.0	[0..1]	[372..21]
MNMA_SHESR - tRNA-specific 2-thiouridylase MnmA OS=Shewanella sp. (strain MR-7) GN=mnmA PE=3 SV=1	425.0	[0..1]	[372..1]
gi\|77629499, gi\|... - gi\|77629499\|ref\|ZP_00792085.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	424.0	[0..8]	[370..24]
MNMA_SHESA - tRNA-specific 2-thiouridylase MnmA OS=Shewanella sp. (strain ANA-3) GN=mnmA PE=3 SV=1	424.0	[0..1]	[372..1]
gi\|238720208, gi... - gi\|77963649\|ref\|ZP_00827457.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	423.0	[0..8]	[370..4]
MNMA_SHEPC - tRNA-specific 2-thiouridylase MnmA OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=mnmA ...	423.0	[0..1]	[372..1]

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Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIEPTHTG KKVIVGMSGG VDSSVSAYLL MQQGYQVEGL FMKNWEEDDN DEYCAAAEDL  60
   61 KDAQAVCDKL GIKLHTVNFA AEYWDNVFEY FLAEYKAGRT PNPDIMCNKE IKFKAFLEFA 120
  121 DDILDADYIA MGHYVRRRDN EDGTTQMLRG VDNNKDQSYF LYTLSHEQVA RSLFPVGELE 180
  181 KHEVREIAKQ MGLITHDKKD STGICFIGER KFTEFLGNYL PAQPGNIETA DGEVIGTHQG 240
  241 LMYHTLGQRK GLGIGGMKNS NDDPWYVVDK DLKRNVLVVG QGGHHPRLMS NGMLVNQLHW 300
  301 VDRKGPINGS QIVVKTRYRQ QDIPCTLTYL DDNTLKVVFD EPVAAVTPGQ SAVFYDGEVC 360
  361 LGGGIIDQLI RG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	2derA
Description:	No description for 2derA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits