YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374172, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374172, gi|....

Description	E-value	Query Range	Subject Range
gi\|117612527, gi... - gi\|78685737\|ref\|ZP_00850513.1\| MutT/nudix family protein [Shewanella sp. ANA-3], gi\|78506624\|gb\|EAP2...	123.0	[0..1]	[158..1]
gi\|217498186, gi... - gi\|217973051\|ref\|YP_002357802.1\| NUDIX hydrolase [Shewanella baltica OS223], gi\|217498186\|gb\|ACK4637... gi\|126174690, gi... - gi\|68542147\|ref\|ZP_00581883.1\| NUDIX hydrolase [Shewanella baltica OS155], gi\|68520219\|gb\|EAN43729.1...	119.0	[0..3]	[158..1]
gi\|113969945, gi... - gi\|82495993\|ref\|ZP_00881565.1\| MutT/nudix family protein [Shewanella sp. MR-4], gi\|82406034\|gb\|EAP46...	118.0	[0..1]	[158..1]
gi\|160875702, gi... - gi\|160875702\|ref\|YP_001555018.1\| NUDIX hydrolase [Shewanella baltica OS195], gi\|160861224\|gb\|ABX4975...	118.0	[0..3]	[158..1]
gi\|78690434, gi\|... - gi\|78690434\|ref\|ZP_00855080.1\| MutT/nudix family protein [Shewanella sp. MR-7], gi\|78510138\|gb\|EAP23...	117.0	[0..1]	[158..1]
gi\|82743669, gi\|... - gi\|82743669\|ref\|ZP_00906301.1\| MutT/nudix family protein [Shewanella sp. W3-18-1], gi\|82718967\|gb\|EA... gi\|124547557, gi... - gi\|124547557\|ref\|ZP_01706426.1\| NUDIX hydrolase [Shewanella putrefaciens 200], gi\|124509104\|gb\|EAY53...	115.0	[0..3]	[158..1]
gi\|21228644, gi\|... - gi\|21228644\|ref\|NP_634566.1\| phosphohydrolase [Methanosarcina mazei Go1], gi\|20907144\|gb\|AAM32238.1\|...	114.0	[0..3]	[145..148]
gi\|19915297, gi\|... - gi\|20090298\|ref\|NP_616373.1\| NAD+ pyrophosphatase [Methanosarcina acetivorans C2A], gi\|19915297\|gb\|A...	113.0	[0..3]	[140..148]
gi\|72397456, gi\|... - gi\|73670294\|ref\|YP_306309.1\| phosphohydrolase [Methanosarcina barkeri str. Fusaro], gi\|72397456\|gb\|A...	111.0	[0..3]	[145..152]
NUD19_ARATH - Nudix hydrolase 19, chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=1 SV=1	110.0	[0..2]	[158..234]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVKARYKPN VTVVCIIHAV SEDKYLLVEE WIDGEQRFNQ PAGHLEANES LIQACEREVF  60
   61 EETGLQLKPQ GLVGIYQFSA NQDLAFVRFT FLVQVDTLLT PKPQDADIHA AHWLSFEQIA 120
  121 AKAHQLRSPL VLDCLNDYRK QLQQGLIHSL ELLNSQRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2b0vA
Description:	NUDIX hydrolase from Nitrosomonas europaea.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.86119802438676	bayes_pls_golite062009
hydrolase activity	0.104572055301535	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: