YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374153, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374153, gi|....

Description	E-value	Query Range	Subject Range
gi\|107102510 - gi\|107102510\|ref\|ZP_01366428.1\| hypothetical protein PaerPA_01003573 [Pseudomonas aeruginosa PACS2] gi\|972779, gi\|11... - gi\|972779\|gb\|AAA93519.1\| involved in biogenesis of type 4 fimbriae [Pseudomonas aeruginosa], pir\|\|B5... gi\|116050962, gi... - gi\|46163937\|ref\|ZP_00136304.2\| COG3215: Tfp pilus assembly protein PilZ [Pseudomonas aeruginosa UCBP... gi\|15598156, gi\|... - gi\|9949058\|gb\|AAG06348.1\|AE004722_4 type 4 fimbrial biogenesis protein PilZ [Pseudomonas aeruginosa ... gi\|94413642, gi\|... - gi\|94413642\|ref\|ZP_01293520.1\| hypothetical protein PaerP_01004546 [Pseudomonas aeruginosa PA7], gi\|... gi\|218890842, gi... - gi\|218890842\|ref\|YP_002439706.1\| type 4 fimbrial biogenesis protein PilZ [Pseudomonas aeruginosa LES... gi\|84326488, gi\|... - gi\|84326488\|ref\|ZP_00974515.1\| COG3215: Tfp pilus assembly protein PilZ [Pseudomonas aeruginosa 2192... gi\|194546920, gi... - gi\|84320284\|ref\|ZP_00968666.1\| COG3215: Tfp pilus assembly protein PilZ [Pseudomonas aeruginosa C371...	199.0	[0..4]	[108..14]
gi\|77460371, gi\|... - gi\|77460371\|ref\|YP_349878.1\| Type IV pilus assembly PilZ [Pseudomonas fluorescens Pf0-1], gi\|7738437...	199.0	[0..4]	[108..14]
gi\|49074504 - gi\|49074504\|gb\|AAT49408.1\| PA2960 [synthetic construct]	199.0	[0..4]	[108..14]
gi\|83633257, gi\|... - gi\|83645214\|ref\|YP_433649.1\| Tfp pilus assembly protein PilZ [Hahella chejuensis KCTC 2396], gi\|8363...	193.0	[0..4]	[108..12]
gi\|71735299, gi\|... - gi\|71735299\|ref\|YP_273891.1\| type IV pilus biogenesis protein PilZ [Pseudomonas syringae pv. phaseol...	193.0	[0..4]	[108..14]
gi\|66044899, gi\|... - gi\|66044899\|ref\|YP_234740.1\| Type IV pilus assembly PilZ [Pseudomonas syringae pv. syringae B728a], ...	192.0	[0..4]	[108..14]
tr\|Q87YH3\|Q87YH3... - Type IV pilus biogenesis protein PilZ OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilZ PE=... gi\|28854228, gi\|... - gi\|28870979\|ref\|NP_793598.1\| type IV pilus biogenesis protein PilZ [Pseudomonas syringae pv. tomato ... gi\|213971680, gi... - gi\|213971680\|ref\|ZP_03399787.1\| type IV pilus biogenesis protein PilZ [Pseudomonas syringae pv. toma...	191.0	[0..4]	[108..14]
gi\|48860774, gi\|... - gi\|90021298\|ref\|YP_527125.1\| type 4 fimbrial biogenesis protein PilZ [Saccharophagus degradans 2-40]...	191.0	[0..4]	[108..13]
gi\|67154547 - gi\|67154547\|ref\|ZP_00416292.1\| Type IV pilus assembly PilZ [Azotobacter vinelandii AvOP] gi\|67154547, gi\|... - gi\|67154547\|ref\|ZP_00416292.1\| Type IV pilus assembly PilZ [Azotobacter vinelandii AvOP], gi\|6708868...	190.0	[0..4]	[108..14]
gi\|94499609, gi\|... - gi\|94499609\|ref\|ZP_01306146.1\| type 4 fimbrial biogenesis protein PilZ [Oceanobacter sp. RED65], gi\|...	186.0	[0..4]	[108..12]

Back

Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDLVVNFDT LHQLYRAYMP FIKPAGLFVA TGETHYLGET LTIAYRLPGA TTSNEFRGVV  60
   61 VWINPLGASG GRPVGIGIKI VSEPDSHKHH IEKLLSRELS SGDLTCTM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.91
Match:	1ywuA
Description:	Solution NMR structure of Pseudomonas Aeruginosa protein PA4608. Northeast Structural Genomics target PaT7
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits