YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374130, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374130, gi|....

Description	E-value	Query Range	Subject Range
gi\|83573008, gi\|... - gi\|83590094\|ref\|YP_430103.1\| delta-aminolevulinic acid dehydratase [Moorella thermoacetica ATCC 3907...	565.0	[0..10]	[329..4]
gi\|78045155, gi\|... - gi\|78045155\|ref\|YP_360053.1\| delta-aminolevulinic acid dehydratase [Carboxydothermus hydrogenoforman...	560.0	[0..9]	[332..1]
gi\|86607365, gi\|... - gi\|86607365\|ref\|YP_476128.1\| delta-aminolevulinic acid dehydratase [Synechococcus sp. JA-3-3Ab], gi\|... gi\|86607365 - gi\|86607365\|ref\|YP_476128.1\| delta-aminolevulinic acid dehydratase [Cyanobacteria bacterium Yellowst...	559.0	[0..8]	[330..2]
gi\|119944101, gi... - gi\|119944101\|ref\|YP_941781.1\| delta-aminolevulinic acid dehydratase [Psychromonas ingrahamii 37], gi...	556.0	[0..5]	[332..2]
gi\|86609891 - gi\|86609891\|ref\|YP_478653.1\| delta-aminolevulinic acid dehydratase [Cyanobacteria bacterium Yellowst... gi\|86558433, gi\|... - gi\|86609891\|ref\|YP_478653.1\| delta-aminolevulinic acid dehydratase [Synechococcus sp. JA-2-3B'a(2-13...	553.0	[0..8]	[330..2]
gi\|27262468 - gi\|27262468\|gb\|AAN87515.1\| Delta-aminolevulinic acid dehydratase [Heliobacillus mobilis]	551.0	[0..10]	[330..14]
gi\|89200306, gi\|... - gi\|89200306\|ref\|ZP_01179060.1\| Porphobilinogen synthase [Bacillus cereus subsp. cytotoxis NVH 391-98...	551.0	[0..14]	[331..8]
gi\|22777750, gi\|... - gi\|23099521\|ref\|NP_692987.1\| delta-aminolevulinic acid dehydratase [Oceanobacillus iheyensis HTE831]...	550.0	[0..13]	[330..8]
gi\|56687269, gi\|... - gi\|56752310\|ref\|YP_173011.1\| delta-aminolevulinic acid dehydratase [Synechococcus elongatus PCC 6301... HEM2_SYNE7 - Delta-aminolevulinic acid dehydratase OS=Synechococcus elongatus (strain PCC 7942) GN=hemB PE=3 SV=2	549.0	[0..9]	[329..1]
gi\|108766041, gi... - gi\|108804798\|ref\|YP_644735.1\| delta-aminolevulinic acid dehydratase [Rubrobacter xylanophilus DSM 99...	549.0	[0..8]	[330..1]

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Predicted Domain #1

Region A:
Residues: [1-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTRENTIA PLRRLRRLRR TEAMRDLVRE THVSLSDLIH PLFIEEHINQ AVPISTLPGI  60
   61 CRLPESALAD EIQRLYALGI RYVMPFGISH TKDPQGSDTW NDNGLLARMI RTIKATAPEM 120
  121 MVIPDICFCE YTDHGHCGVL HQDEVCNDQT VANLVKQSVT AAKAGADMLA PSAMMDGQIK 180
  181 AIRQGLDEAG FEHVAILAHA AKFASSFYGP FRAAVDCELS GNRKGYQLDY ANGRQALLEA 240
  241 LLDEEEGADI LMVKPGTPYL DVLSRLRQET HLPLAAYQVG GEYAGIKFAA LAGALDERAV 300
  301 VTETFIGLKR AGADLIVSYY TKQYAEWLAE LRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	141.0
Match:	1i8jA
Description:	5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.67031204377352	bayes_pls_golite062009
porphobilinogen synthase activity	2.60788870678525	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	0.877814788710295	bayes_pls_golite062009
binding	0.584966797881465	bayes_pls_golite062009
carbon-carbon lyase activity	0.55793298895297	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	0.487442544994915	bayes_pls_golite062009
transaldolase activity	0.184100272651834	bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	0.132814423759102	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: