YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374086, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	460 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374086, gi|....

Description	E-value	Query Range	Subject Range
gi\|7547007, gi\|1... - gi\|7547007\|gb\|AAF63755.1\|AF243474_1 putative ethylene receptor [Vitis vinifera], gi\|157357089\|emb\|CA...	243.0	[0..1]	[457..112]
ETR1_PELHO - Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1	237.0	[0..1]	[457..112]
gi\|11935116 - gi\|11935116\|gb\|AAG41977.1\|AF311942_1 ethylene receptor [Carica papaya]	237.0	[0..1]	[459..112]
gi\|7407123 - gi\|7407123\|gb\|AAF61919.1\|AF227742_1 ethylene receptor [Mangifera indica]	237.0	[0..1]	[460..112]
gi\|145411509 - gi\|145411509\|gb\|ABP68413.1\| putative ethylene receptor [Cucumis melo] ETR1_CUCMN - Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1	237.0	[0..1]	[460..112]
ERS1_ORYSJ - Probable ethylene response sensor 1 OS=Oryza sativa subsp. japonica GN=ERS1 PE=2 SV=1 ERS1_ORYSI - Probable ethylene response sensor 1 OS=Oryza sativa subsp. indica GN=ERS1 PE=2 SV=1	236.0	[0..1]	[453..112]
gi\|7489538, gi\|2... - pir\|\|T03439 probable ethylene-response protein - rice, gi\|2281705\|gb\|AAB72193.1\| ethylene responsiv... gi\|15054446 - gi\|15054446\|gb\|AAK77941.1\| putative ethylene receptor [Oryza sativa Indica Group]	236.0	[0..1]	[453..112]
ETR1_CUCSA - Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1	235.0	[0..1]	[460..112]
gi\|56900932 - gi\|56900932\|gb\|AAW31759.1\| ethylene receptor [Hevea brasiliensis]	235.0	[0..1]	[454..112]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNEQQHEL LMQLKVENQK LLEFKKLNNL MLKTLKAFTN NKEQSTPFRS LFELIAQELK  60
   61 PVVQLLITCN HENDSFYIVS STDEMLIGRH FQLDDTVNSK PEQSIFSQST VFFNLNLTPK 120
  121 WPASLKGLLP NAASALIQPV KIASRCYAIV LVINEVN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.780	0.035	two-component sensor activity	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.865	0.035	two-component sensor activity	a.25.1	Ferritin-like
View	Download	0.898	0.035	two-component sensor activity	a.24.3	Cytochromes
View	Download	0.783	0.035	two-component sensor activity	a.47.2	t-snare proteins
View	Download	0.795	0.035	two-component sensor activity	a.24.9	alpha-catenin/vinculin

Predicted Domain #2

Region A:
Residues: [158-460]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFDAEAKSVM SNYSSFIAST LTLMEYRHIA AERDTLFAQQ KRIEQSMARQ GKLAAIGQLA  60
   61 AGVAHELNNP LGFIYSNLNT FELYLKDINT FLMEVCNSHP NAIKLYNKHN LDFILKDSSE 120
  121 LINESLAGAR RARDIIKNLR NFSHPDENTI STINILELIT DTVRIANTQV KKHARIKINH 180
  181 DLHHAFTQGN ATQLSQVILN LINNAHHSIK HQHGLIEISI NKFNNWINIE IEDNGCGIDD 240
  241 TDIPHIFEPF FTTKEIGQGT GLGLSISRAI IEQHNGCIAL VHTGLKGTKF VISLPESNHV 300
  301 SDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.154902
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits