YRC Public Data Repository - Protein Structure Prediction

Protein:	DGTL1_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGTL1_SHEON.

Description	E-value	Query Range	Subject Range
DGTL1_SHEB9 - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Shewanella baltica (strain OS195) GN=...	508.0	[0..1]	[435..1]
gi\|68543513, gi\|... - gi\|68543513\|ref\|ZP_00583215.1\| Deoxyguanosinetriphosphate triphosphohydrolase [Shewanella baltica OS...	507.0	[0..1]	[435..1]
DGTL1_SHESW - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Shewanella sp. (strain W3-18-1) GN=Sp... gi\|145564658, gi... - gi\|77816078\|ref\|ZP_00815286.1\| Deoxyguanosinetriphosphate triphosphohydrolase [Shewanella putrefacie...	506.0	[0..1]	[435..1]
DGTL1_SHESR - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Shewanella sp. (strain MR-7) GN=Shewm...	506.0	[0..1]	[435..1]
DGTL1_SHESA - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Shewanella sp. (strain ANA-3) GN=Shew...	505.0	[0..1]	[435..1]
DGTL1_SHESM - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Shewanella sp. (strain MR-4) GN=Shewm...	504.0	[0..1]	[435..1]
DGTL1_VIBVU - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Vibrio vulnificus (strain CMCP6) GN=V... DGTL1_VIBVY - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Vibrio vulnificus (strain YJ016) GN=V... DGTL1_VIBVU, DGT... - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Vibrio vulnificus GN=VV1_0014 PE=3 SV...	483.0	[0..2]	[433..9]
DGTL1_VIBPA - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Vibrio parahaemolyticus serotype O3:K... DGTL1_VIBPA, DGT... - Deoxyguanosinetriphosphate triphosphohydrolase-like protein OS=Vibrio parahaemolyticus GN=VP0925 PE=...	482.0	[0..4]	[433..7]
gi\|90440103, gi\|... - gi\|90579270\|ref\|ZP_01235080.1\| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Vibrio a...	477.0	[0..2]	[437..6]
gi\|89073238, gi\|... - gi\|89073238\|ref\|ZP_01159768.1\| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Photobac...	476.0	[0..2]	[437..6]

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Predicted Domain #1

Region A:
Residues: [1-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSVWQERR HGEDKQRRND HRSPYQRDRA RILHSAAFRR LQAKTQVLGV GMNDFYRTRL  60
   61 THSLEVSQIG TGIAAQLSRK YPEHKPLLDS MSLLESLCLA HDIGHPPFGH GGEVALNYMM 120
  121 RHHGGFEGNG QTFRILSKLE PYTLDFGMNL CRRTMLGILK YPAPQSSLFI AGNHHEITNH 180
  181 RQLKPSQWPP VKGIFDDDND IFDWVLEPLS AADRTRFTSA QPSIQPNYPH LRTQFKSFDC 240
  241 SIMELADDIA YAVHDLEDAI VMGIVTASQW QQDVAPTFEH SNDPWIRQEL ADIGTKLFSH 300
  301 EHHLRKDAIG TLVNGFVTAI IITDDGVFEE PLLRFNASLE VEFAHALNVL KQLVYKYVIR 360
  361 KPEIQMLEYK GQQIVMGLFE AFASDPERLL PLNTQERWRA SEQLGLNSHR ILADYISGMT 420
  421 DEFAGRLYQQ LFTLRLDRTW S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2pgsA
Description:	No description for 2pgsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits