YRC Public Data Repository - Protein Structure Prediction

Protein:	KDSB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KDSB_SHEON.

Description	E-value	Query Range	Subject Range
gi\|7434867, gi\|3... - pir\|\|S78498 probable glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) - Neisseria meningitidi...	197.0	[0..2]	[244..40]
gi\|197361929, gi... - gi\|197361929\|ref\|YP_002141566.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica ... gi\|56127258, gi\|... - gi\|56413001\|ref\|YP_150076.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica sero...	196.0	[0..1]	[244..1]
gi\|11261719 - pir\|\|B81240 glucose-1-phosphate thymidylyltransferase NMB0080, NMB0062 [imported] - Neisseria mening... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B (strain MC58) GN=rml... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B GN=rmlA1 PE=3 SV=2	195.0	[0..1]	[244..1]
gi\|63033903 - gi\|63033903\|gb\|AAY28254.1\| RmlA [Escherichia coli]	195.0	[0..1]	[244..1]
gi\|46985 - gi\|46985\|emb\|CAA43074.1\| glucose-1-phosphate thymidylyltransferase [Salmonella enterica] gi\|96668 - pir\|\|S23342 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) [validated] - Salmonella cholera... RMLA_SALAN - Glucose-1-phosphate thymidylyltransferase OS=Salmonella anatum GN=rmlA PE=3 SV=1	194.0	[0..1]	[244..1]
gi\|25288650, gi\|... - gi\|25288650\|pir\|\|AD0767 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) - Salmonella enteric... gi\|213650449 - gi\|213650449\|ref\|ZP_03380502.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica s... gi\|29136903, gi\|... - gi\|29141277\|ref\|NP_804619.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica sero... gi\|213425547 - gi\|213425547\|ref\|ZP_03358297.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica s... gi\|214001793 - gi\|214001793\|ref\|ZP_03412528.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica s... gi\|16761027 - gi\|16761027\|ref\|NP_456644.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica sero... gi\|213052827 - gi\|213052827\|ref\|ZP_03345705.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica s...	194.0	[0..1]	[244..1]
gi\|82714332, gi\|... - gi\|82738594\|ref\|ZP_00901423.1\| Glucose-1-phosphate thymidylyltransferase, long form [Pseudomonas put...	194.0	[0..2]	[242..5]
gi\|9957817 - gi\|9957817\|gb\|AAG09500.1\|AF279615_3 glucose-1-phosphate thymidylyltransferase [Salmonella enterica]	194.0	[0..1]	[244..1]
RMLA_NEIMA - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup A GN=rmlA1 PE=3 SV=1 RMLA_NEIMA - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup A / serotype 4A (strai... gi\|11261721 - pir\|\|H82014 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) NMA0205 [imported] - Neisseria m...	193.0	[0..1]	[244..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVTLLIPAR YGSSRFPGKP LAPINGKPMI QHVYERASLA KGLTNIYVAT DDERIKSAVE  60
   61 GFGGKVVMTS PDAASGTDRI NDAINQLGLK DDDLVINLQG DQPLIDPTSI EQVISLFERH 120
  121 PGEFEMATLG YEIVNKAELD DPMHVKMVFD NDYYALYFSR ARIPFGRDTK DYPVYKHLGV 180
  181 YAYTRRFVQA FAALPLGRLE DLEKLEQLRA LEYGHKIKVA ISAFDSIEVD TPEDIRKCEQ 240
  241 RLAVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1vh1A
Description:	Crystal structure of CMP-KDO synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
polypeptide N-acetylgalactosaminyltransferase activity	2.87534754775824	bayes_pls_golite062009
3-deoxy-manno-octulosonate cytidylyltransferase activity	2.75368830096228	bayes_pls_golite062009
catalytic activity	2.25720704697246	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.04393180556087	bayes_pls_golite062009
transferase activity	1.67251862595728	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.51711005399931	bayes_pls_golite062009
cytidylyltransferase activity	1.30540294475078	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	1.21894113759929	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.696745721981411	bayes_pls_golite062009
nucleotidyltransferase activity	0.67147527259372	bayes_pls_golite062009
uridylyltransferase activity	0.54930147038803	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.48277064848483	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.38929738612511	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.280335197569099	bayes_pls_golite062009
galactosyltransferase activity	0.21201767008409	bayes_pls_golite062009
glucose-1-phosphate thymidylyltransferase activity	0.204810937394121	bayes_pls_golite062009
guanylyltransferase activity	0.14847697203788	bayes_pls_golite062009
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00302319544700058	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: