YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373997, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	699 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373997, gi|....

Description	E-value	Query Range	Subject Range
gi\|113907848, gi... - gi\|160875557\|ref\|YP_001554873.1\| alpha-glucosidase [Shewanella baltica OS195], gi\|160861079\|gb\|ABX49...	1022.0	[0..1]	[699..1]
gi\|113970214, gi... - gi\|82497310\|ref\|ZP_00882866.1\| alpha-glucosidase [Shewanella sp. MR-4], gi\|82404675\|gb\|EAP45359.1\| a...	1017.0	[0..24]	[699..28]
gi\|125997747, gi... - gi\|68542194\|ref\|ZP_00581929.1\| alpha-glucosidase [Shewanella baltica OS155], gi\|68520119\|gb\|EAN43632...	1017.0	[0..1]	[699..1]
gi\|78505566, gi\|... - gi\|78686682\|ref\|ZP_00851446.1\| alpha-glucosidase [Shewanella sp. ANA-3], gi\|78505566\|gb\|EAP19095.1\| ...	1016.0	[0..24]	[699..28]
gi\|114047597, gi... - gi\|78690868\|ref\|ZP_00855504.1\| alpha-glucosidase [Shewanella sp. MR-7], gi\|78509709\|gb\|EAP23095.1\| a...	1012.0	[0..24]	[699..28]
gi\|89949839, gi\|... - gi\|90020239\|ref\|YP_526066.1\| alpha-glucosidase [Saccharophagus degradans 2-40], gi\|89949839\|gb\|ABD79...	995.0	[0..25]	[699..7]
gi\|21243330, gi\|... - gi\|21243330\|ref\|NP_642912.1\| alpha-glucosidase [Xanthomonas axonopodis pv. citri str. 306], gi\|21108...	983.0	[0..27]	[696..20]
gi\|78036786, gi\|... - gi\|78048356\|ref\|YP_364531.1\| putative alpha-glucosidase [Xanthomonas campestris pv. vesicatoria str....	978.0	[0..27]	[696..20]
gi\|69164086, gi\|... - gi\|69952619\|ref\|ZP_00640027.1\| alpha-glucosidase [Shewanella frigidimarina NCIMB 400], gi\|69164086\|g...	971.0	[0..23]	[699..20]
gi\|21231903, gi\|... - gi\|21231903\|ref\|NP_637820.1\| alpha-glucosidase [Xanthomonas campestris pv. campestris str. ATCC 3391... gi\|66573301, gi\|... - gi\|66767969\|ref\|YP_242731.1\| alpha-glucosidase [Xanthomonas campestris pv. campestris str. 8004], gi...	966.0	[0..45]	[696..39]

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Predicted Domain #1

Region A:
Residues: [1-699]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIKANAIQL TTLQSNLRSQ RRLSPMCIAL TVSSFFSANL VAQTVTLSSP NQHIQISLSD  60
   61 DTGRAEYKID FHGKTIIEPS RLGLVFQSIG ELGQGLRIKS SHITSTDDKW QQPWGEQEWI 120
  121 KDQHNQLSVV LTDGKIDLNL EFNAFDDGIG FRYHLAEQAA LPVDTPLSIT DELTEFNIGQ 180
  181 SNKATAWWIP SRGWNRYEYL YRTSALNQVD RAHTPFTFRL ADGTHLSIHE AALVNFASMT 240
  241 LDQQRDGKLK ADLTPWSDGI RVKTQAGFYT PWRTIQIADK ATGLLNSHLI LNLNEPNKLG 300
  301 DVSWIKPGKY VGIWWGMHLN KNTWGSGPKH GATTSETKRY MDFAAKYHFD GVLVEGWNQG 360
  361 WDGDWFHNGD QFSFTKAYDD FDLPAITAYG AKKGVRLIGH HETAGSVTHY RKQMADAFIL 420
  421 YEKHGVTQVK TGYVADGGQI KRFDENGIMR HEWHDGQFMV GEYLYNVTEA AKHHISINTH 480
  481 EPIKDTGLRR TYPNWISREG ARGQEYNAWG SPPNSPEHTA MLPFTRMLAG PMDFTPGIFD 540
  541 LAPKGLDAEN RVQTTLMKQL ALYVVLYSPI QMAADLPRNY QKHLDAFQFI RDVPTDWYQS 600
  601 IALAGEVGDY VVFARQAKDQ KDWYLGALTD ETARKVTVKL DFLDPHKRYQ AQIYRDGAKA 660
  661 DWKTNPYDYV IETKEVSAKD SLNLALASSS GTAIRFKVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2d73A
Description:	No description for 2d73A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits