YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348453, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348453, gi|....

Description	E-value	Query Range	Subject Range
gi\|46915719, gi\|... - gi\|54302297\|ref\|YP_132290.1\| putative MutT/nudix family protein [Photobacterium profundum SS9], gi\|4...	127.0	[0..1]	[176..7]
gi\|75857904, gi\|... - gi\|75857904\|ref\|ZP_00765516.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	125.0	[0..1]	[176..7]
gi\|90328060, gi\|... - gi\|90411214\|ref\|ZP_01219227.1\| putative MutT/nudix family protein [Photobacterium profundum 3TCK], g...	125.0	[0..1]	[176..7]
gi\|91191118, gi\|... - gi\|91224207\|ref\|ZP_01259470.1\| MutT/nudix family protein [Vibrio alginolyticus 12G01], gi\|91191118\|g...	123.0	[0..1]	[176..1]
gi\|37200700, gi\|... - gi\|37676159\|ref\|NP_936555.1\| MutT/nudix family protein [Vibrio vulnificus YJ016], gi\|37200700\|dbj\|BA...	122.0	[0..1]	[176..1]
gi\|84390409, gi\|... - gi\|84390409\|ref\|ZP_00991420.1\| MutT/nudix family protein [Vibrio splendidus 12B01], gi\|84376669\|gb\|E...	121.0	[0..1]	[176..1]
gi\|218676195, gi... - gi\|218676195\|ref\|YP_002395014.1\| MutT/NUDIX protein [Vibrio splendidus LGP32], gi\|218324463\|emb\|CAV2... gi\|86144369, gi\|... - gi\|86144369\|ref\|ZP_01062701.1\| MutT/nudix family protein [Vibrio sp. MED222], gi\|85837268\|gb\|EAQ5538...	121.0	[0..1]	[176..1]
gi\|27359593, gi\|... - gi\|27368020\|ref\|NP_763547.1\| NTP pyrophosphohydrolase [Vibrio vulnificus CMCP6], gi\|27359593\|gb\|AAO0...	121.0	[0..1]	[176..1]
gi\|28808396 - gi\|28808396\|dbj\|BAC61601.1\| MutT/nudix family protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28900113, gi\|... - gi\|28900113\|ref\|NP_799768.1\| MutT/nudix family protein [Vibrio parahaemolyticus RIMD 2210633], gi\|28... gi\|153837091, gi... - gi\|153837091\|ref\|ZP_01989758.1\| MutT/nudix family protein [Vibrio parahaemolyticus AQ3810], gi\|14974...	120.0	[0..1]	[176..1]
gi\|106880773, gi... - gi\|119945508\|ref\|YP_943188.1\| nucleotide phosphate derivative pyrophosphohydrolases, MutT/nudix fami...	120.0	[0..1]	[176..26]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLKSTQAA NIDLKQARIF YRQAARAIVL SGEDILLLYT QKYRDYGLPG GGVDKGESIE  60
   61 VGLIRELQEE TGAIAAHVLA PFGRYEEYRP WFREGANVVH MDSYCYLCEI DMSLGYRGLG 120
  121 EPRLEAHEVK NGMRPEWINI HQAIAHNEEI QHTFPNKGQS IDRETFLLKQ IVAELL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.30103
Match:	2pbtA
Description:	No description for 2pbtA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits