YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373990, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373990, gi|....

Description	E-value	Query Range	Subject Range
gi\|83756702, gi\|... - gi\|83815308\|ref\|YP_446148.1\| MoeZ/MoeB domain-contain protein [Salinibacter ruber DSM 13855], gi\|837...	306.0	[0..4]	[290..8]
gi\|106891733, gi... - gi\|148654884\|ref\|YP_001275089.1\| UBA/THIF-type NAD/FAD binding protein [Roseiflexus sp. RS-1], gi\|14...	299.0	[0..6]	[289..1]
gi\|222526984, gi... - gi\|222526984\|ref\|YP_002571455.1\| UBA/THIF-type NAD/FAD binding protein [Chloroflexus sp. Y-400-fl], ... gi\|53796678 - ref\|ZP_00020762.2\| COG0476: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine bi... gi\|163849021, gi... - gi\|76258733\|ref\|ZP_00766387.1\| UBA/THIF-type NAD/FAD binding fold:Rhodanese-like:MoeZ/MoeB [Chlorofl...	298.0	[0..6]	[290..1]
gi\|117928984, gi... - gi\|88931318\|ref\|ZP_01137012.1\| Rhodanese-like [Acidothermus cellulolyticus 11B], gi\|88912597\|gb\|EAR3...	297.0	[0..1]	[294..1]
gi\|114777472, gi... - gi\|114777472\|ref\|ZP_01452469.1\| molybdopterin biosynthesis protein MoeB [Mariprofundus ferrooxydans ...	297.0	[0..12]	[292..5]
gi\|91203467 - gi\|91203467\|emb\|CAJ71120.1\| strongly similar to molybdopterin synthesis protein MoeB and thiamin bio...	296.0	[0..12]	[295..6]
gi\|35213984, gi\|... - gi\|37522981\|ref\|NP_926358.1\| hypothetical protein gll3412 [Gloeobacter violaceus PCC 7421], gi\|35213...	295.0	[0..1]	[294..1]
gi\|7448808 - pir\|\|A70415 molybdopterin biosynthesis protein MoeB - Aquifex aeolicus gi\|2983752, gi\|1... - gi\|2983752\|gb\|AAC07312.1\| molybdopterin biosynthesis protein MoeB [Aquifex aeolicus VF5], gi\|1560653...	294.0	[0..10]	[289..3]
gi\|29606732, gi\|... - gi\|29829624\|ref\|NP_824258.1\| molybdopterin biosynthesis-like protein MoeZ [Streptomyces avermitilis ...	294.0	[0..1]	[290..1]
gi\|45545541, gi\|... - gi\|68563155\|ref\|ZP_00602357.1\| UBA/THIF-type NAD/FAD binding fold:Rhodanese-like:MoeZ/MoeB [Rubrobac...	293.0	[0..3]	[294..7]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATAQKSSS LNDKDFIRYS RQIFLPEVGE AGLLQLKQCH VVIIGCGGLG QLAAQYLACA  60
   61 GIGSITLVDD DRVELSNLPR QLLFNEADIG QYKAWVAKQK LAVLAPDCQL FAFVQMLTLD 120
  121 SAESLLAHVA TANRQQSALL LDCTDNLAAR HCINQLCIEH ALPLVSASIA AFNGQLFAVD 180
  181 QQRFPAGGCY HCVFPADTYA PQNCSNQGVL GPSVGVMASM QALLAIQLLL TATVPNLEHS 240
  241 TKPQAVGAEH LLGRFWRFDA KSLQWHSARL TRDPECEVCA PSWNTNTDHV LKSVHKGELL 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.39794
Match:	1jw9B
Description:	Molybdenum cofactor biosynthesis protein MoeB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
small protein activating enzyme activity	1.61603220653307	bayes_pls_golite062009
catalytic activity	1.59245438598251	bayes_pls_golite062009
URM1 activating enzyme activity	0.936791644743361	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: