YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373968, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373968, gi|....

Description	E-value	Query Range	Subject Range
gi\|81240934, gi\|... - gi\|82776786\|ref\|YP_403135.1\| cytoplasmic asparaginase I [Shigella dysenteriae Sd197], gi\|81240934\|gb...	437.0	[0..1]	[337..1]
gi\|168770732, gi... - gi\|189360324\|gb\|EDU78743.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4486], gi\|168770732\|re... gi\|187769442, gi... - gi\|187769442\|gb\|EDU33286.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4196], gi\|168774925\|re... gi\|73855392, gi\|... - gi\|74311915\|ref\|YP_310334.1\| cytoplasmic asparaginase I [Shigella sonnei Ss046], gi\|73855392\|gb\|AAZ8... gi\|189000367, gi... - gi\|189000367\|gb\|EDU69353.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4076], gi\|168782191\|re... gi\|168788172, gi... - gi\|189371969\|gb\|EDU90385.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC869], gi\|168788172\|ref... gi\|168801077, gi... - gi\|189376715\|gb\|EDU95131.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC508], gi\|168801077\|ref... gi\|170019886, gi... - gi\|170019886\|ref\|YP_001724840.1\| cytoplasmic asparaginase I [Escherichia coli ATCC 8739], gi\|1697548... ASPG1_ECO57 - L-asparaginase 1 OS=Escherichia coli O157:H7 GN=ansA PE=3 SV=1 gi\|169889259, gi... - gi\|170081424\|ref\|YP_001730744.1\| cytoplasmic L-asparaginase I [Escherichia coli str. K-12 substr. DH... EG10045 - cytoplasmic L-asparaginase 1 / L-asparaginase 1, cytoplasmic, low affinity gi\|170520221, gi... - gi\|170682503\|ref\|YP_001743482.1\| L-asparaginase 1 [Escherichia coli SMS-3-5], gi\|170520221\|gb\|ACB183... gi\|83586064, gi\|... - gi\|83586064\|ref\|ZP_00924702.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|157158977, gi... - gi\|75190798\|ref\|ZP_00704065.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|194433483, gi... - gi\|83569626\|ref\|ZP_00921077.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|75236766, gi\|... - gi\|75236766\|ref\|ZP_00720837.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|193065788, gi... - gi\|75256167\|ref\|ZP_00727863.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|188016257, gi... - gi\|188016257\|gb\|EDU54379.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4113], gi\|168749410\|re... gi\|194413433, gi... - gi\|75210252\|ref\|ZP_00710420.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|189356163, gi... - gi\|189356163\|gb\|EDU74582.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4401], gi\|168756778\|re... gi\|75227740, gi\|... - gi\|75227740\|ref\|ZP_00714472.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|189367424, gi... - gi\|189367424\|gb\|EDU85840.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4501], gi\|168762160\|re... ASPG1_ECOLI, ASG... - L-asparaginase 1 (EC 3.5.1.1) (L-asparaginase I) (L-asparagine amidohydrolase I) (L-ASNase I) - Esch... gi\|218352058, gi... - gi\|218695326\|ref\|YP_002402993.1\| cytoplasmic asparaginase I [Escherichia coli 55989], gi\|218352058\|e... gi\|254793386, gi... - gi\|254793386\|ref\|YP_003078223.1\| cytoplasmic L-asparaginase I [Escherichia coli O157:H7 str. TW14359... gi\|218699667, gi... - gi\|218699667\|ref\|YP_002407296.1\| cytoplasmic asparaginase I [Escherichia coli IAI39], gi\|218369653\|e... gi\|254161825, gi... - gi\|254161825\|ref\|YP_003044933.1\| cytoplasmic asparaginase I [Escherichia coli B str. REL606], gi\|253... gi\|218705265, gi... - gi\|218705265\|ref\|YP_002412784.1\| cytoplasmic asparaginase I [Escherichia coli UMN026], gi\|218432362\|... gi\|254288613, gi... - gi\|254288613\|ref\|YP_003054361.1\| cytoplasmic asparaginase I [Escherichia coli BL21(DE3)], gi\|2539779... gi\|242377488, gi... - gi\|251785215\|ref\|YP_002999519.1\| hypothetical protein B21_01724 [Escherichia coli BL21], gi\|24237748... gi\|238900981, gi... - gi\|238900981\|ref\|YP_002926777.1\| cytoplasmic L-asparaginase I [Escherichia coli BW2952], gi\|23886071... gi\|89108606, gi\|... - gi\|89108606\|ref\|AP_002386.1\| cytoplasmic L-asparaginase I [Escherichia coli str. K-12 substr. W3110]... gi\|13361941, gi\|... - gi\|15831728\|ref\|NP_310501.1\| cytoplasmic asparaginase I [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|195937454 - gi\|195937454\|ref\|ZP_03082836.1\| cytoplasmic asparaginase I [Escherichia coli O157:H7 str. EC4024] gi\|208724828, gi... - gi\|208810312\|ref\|ZP_03252188.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4206], gi\|20872482... gi\|208731342, gi... - gi\|208816999\|ref\|ZP_03258119.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4045], gi\|20873134... gi\|208820019, gi... - gi\|208820019\|ref\|ZP_03260339.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4042], gi\|20874014... EG10045 - cytoplasmic L-asparaginase 1 / L-asparaginase 1, cytoplasmic, low affinity gi\|209161040, gi... - gi\|209399640\|ref\|YP_002270839.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. EC4115], gi\|2091610... gi\|209912388, gi... - gi\|209919129\|ref\|YP_002293213.1\| cytoplasmic asparaginase I [Escherichia coli SE11], gi\|209912388\|db... gi\|215265055, gi... - gi\|215486983\|ref\|YP_002329414.1\| cytoplasmic asparaginase I [Escherichia coli O127:H6 str. E2348/69]... gi\|217328832, gi... - gi\|217328832\|ref\|ZP_03444913.1\| L-asparaginase 1 [Escherichia coli O157:H7 str. TW14588], gi\|2173181... gi\|124529953, gi... - gi\|124529953\|ref\|ZP_01700765.1\| L-asparaginases, type I [Escherichia coli B], gi\|124499506\|gb\|EAY469...	436.0	[0..1]	[337..1]
gi\|187428127, gi... - gi\|75177305\|ref\|ZP_00697394.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	436.0	[0..1]	[337..1]
gi\|115513062, gi... - gi\|117623938\|ref\|YP_852851.1\| cytoplasmic asparaginase I [Escherichia coli APEC O1], gi\|115513062\|gb... gi\|218365404, gi... - gi\|218558635\|ref\|YP_002391548.1\| cytoplasmic asparaginase I [Escherichia coli S88], gi\|218365404\|emb... gi\|91072558, gi\|... - gi\|91210984\|ref\|YP_540970.1\| cytoplasmic asparaginase I [Escherichia coli UTI89], gi\|91072558\|gb\|ABE... gi\|226900475, gi... - gi\|237705718\|ref\|ZP_04536199.1\| cytoplasmic asparaginase I [Escherichia sp. 3_2_53FAA], gi\|226900475...	435.0	[0..1]	[337..1]
gi\|82543828, gi\|... - gi\|82543828\|ref\|YP_407775.1\| cytoplasmic asparaginase I [Shigella boydii Sb227], gi\|81245239\|gb\|ABB6...	434.0	[0..1]	[337..1]
gi\|24051772, gi\|... - gi\|24112836\|ref\|NP_707346.1\| cytoplasmic asparaginase I [Shigella flexneri 2a str. 301], gi\|24051772... gi\|30062970, gi\|... - gi\|30062970\|ref\|NP_837141.1\| cytoplasmic asparaginase I [Shigella flexneri 2a str. 2457T], gi\|300412...	434.0	[0..1]	[337..1]
gi\|75513737, gi\|... - gi\|75513737\|ref\|ZP_00736113.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|157161229, gi... - gi\|75195835\|ref\|ZP_00705905.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit...	434.0	[0..1]	[337..1]
gi\|110343481, gi... - gi\|110641889\|ref\|YP_669619.1\| cytoplasmic asparaginase I [Escherichia coli 536], gi\|110343481\|gb\|ABG... gi\|75241358, gi\|... - gi\|75241358\|ref\|ZP_00725209.1\| COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit... gi\|227885805, gi... - gi\|227885805\|ref\|ZP_04003610.1\| cytoplasmic asparaginase I [Escherichia coli 83972], gi\|227837378\|gb... gi\|26248025, gi\|... - gi\|26248025\|ref\|NP_754065.1\| cytoplasmic asparaginase I [Escherichia coli CFT073], gi\|26108428\|gb\|AA... gi\|218689708, gi... - gi\|218689708\|ref\|YP_002397920.1\| cytoplasmic asparaginase I [Escherichia coli ED1a], gi\|218427272\|em...	434.0	[0..1]	[337..1]
gi\|25330464 - gi\|25330464\|pir\|\|F85786 asparaginase (EC 3.5.1.1) I, cytoplasmic [imported] - Escherichia coli (stra... gi\|12515793, gi\|... - gi\|15802179\|ref\|NP_288201.1\| cytoplasmic asparaginase I [Escherichia coli O157:H7 EDL933], gi\|125157...	434.0	[0..1]	[337..1]
gi\|167552355, gi... - gi\|205322964\|gb\|EDZ10803.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|167991891, gi... - gi\|205329738\|gb\|EDZ16502.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|16419811, gi\|... - gi\|16764645\|ref\|NP_460260.1\| cytoplasmic asparaginase I [Salmonella typhimurium LT2], gi\|16419811\|gb... gi\|161363668, gi... - gi\|161614304\|ref\|YP_001588270.1\| cytoplasmic asparaginase I [Salmonella enterica subsp. enterica ser... gi\|194712595, gi... - gi\|194737093\|ref\|YP_002114311.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Schwa... lcl\|NC_016856.1_... - [gene=ansA] [protein=asparaginase] [protein_id=YP_005237146.1] [location=complement(1381774..1382790... gi\|205332679, gi... - gi\|205332679\|gb\|EDZ19443.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|168238959, gi... - gi\|197288240\|gb\|EDY27625.1\| L-asparaginase 1 [Salmonella enterica subsp. enterica serovar Schwarzeng...	429.0	[0..1]	[337..1]

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Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRSIYVAY TGGTIGMQKT DNGFAPVAGF LTQCVQSMPE FYHAEMPEFV IHEYCPLIDS  60
   61 SNMAPTDWQM IADDINANYD KYDGFVILHG TDTMAYTASA LSFMLQGLSK PVIVTGSQIP 120
  121 LAQLRSDGQT NLLNSLYIAA NYPVAEVCLF FNNKLFRGNR STKAHADGFD AFASPNFPLL 180
  181 LEAGIKINLR AGKIATPSNN PLEVANISPQ PVGVVTLYPG ISTQIFENIL QQPVKALILL 240
  241 TFGVGNAPQD VALLRTLKQA DERGIVLVNL TQCFQGKVNM GGYATGNALA KAGVISGADM 300
  301 TIEAALAKLH YLLSKNLKPI EIKTAMLQNL VGELSPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	123.0
Match:	2p2dA
Description:	No description for 2p2dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits