YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348408, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	672 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348408, gi|....

Description	E-value	Query Range	Subject Range
gi\|114334608, gi... - gi\|114563315\|ref\|YP_750828.1\| NADH:flavin oxidoreductase/NADH oxidase [Shewanella frigidimarina NCIM...	495.0	[0..1]	[672..1]
gi\|119767359, gi... - gi\|68548387\|ref\|ZP_00587893.1\| NADH:flavin oxidoreductase/NADH oxidase:FAD-dependent pyridine nucleo...	493.0	[0..1]	[672..1]
gi\|113970248, gi... - gi\|82498554\|ref\|ZP_00884042.1\| 2,4-dienoyl-CoA reductase, putative [Shewanella sp. MR-4], gi\|8240344...	488.0	[0..1]	[672..1]
gi\|78505600, gi\|... - gi\|78686716\|ref\|ZP_00851480.1\| 2,4-dienoyl-CoA reductase, putative [Shewanella sp. ANA-3], gi\|785056...	486.0	[0..1]	[672..1]
gi\|114047563, gi... - gi\|114047563\|ref\|YP_738113.1\| 2,4-dienoyl-CoA reductase [Shewanella sp. MR-7], gi\|113889005\|gb\|ABI43...	485.0	[0..1]	[672..1]
gi\|85712439, gi\|... - gi\|85712439\|ref\|ZP_01043488.1\| NADH:flavin oxidoreductase, Old Yellow Enzyme family protein [Idiomar...	481.0	[0..3]	[672..8]
gi\|88803671, gi\|... - gi\|88803671\|ref\|ZP_01119195.1\| 2,4-dienoyl-CoA reductase FadH1 [Polaribacter irgensii 23-P], gi\|8878...	479.0	[0..1]	[670..1]
gi\|91793255, gi\|... - gi\|91793255\|ref\|YP_562906.1\| NADH:flavin oxidoreductase/NADH oxidase [Shewanella denitrificans OS217...	478.0	[0..1]	[672..1]
gi\|187428224, gi... - gi\|75176057\|ref\|ZP_00696225.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Shige...	475.0	[0..1]	[672..1]
gi\|82545337, gi\|... - gi\|82545337\|ref\|YP_409284.1\| putative NADPH dehydrogenase [Shigella boydii Sb227], gi\|81246748\|gb\|AB...	475.0	[0..1]	[672..1]

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Predicted Domain #1

Region A:
Residues: [1-672]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPHLLEPL DLGFTQLKNR VLMGSMHTGL EEEKGGFEKL AAFYKERALG GVGLIVTGGI  60
   61 SPNLRGRLTP HACQLSFPWQ VGKHRIVTQA VHEAGGKICM QILHAGRYGY HPFSQAPSKI 120
  121 KSPITPFTPS AMSSRQVRGT IKDYASSAAL AKRAGYDGVE VMGSEGYLIN QFISSRTNTR 180
  181 TDEWGGSFEK RAQFPIEIVN AIRAKVGKDF IIIFRLSMLD LVDNGSTWDE VVQLAKWLEH 240
  241 AGVSIINTGI GWHEARVPTI ATSVPRGAFA WVTQKLKQSV AVPLIATNRI NTPEIGEQII 300
  301 ASGQADMVSM ARPFLADPEF VNKAAANTPE LINTCIGCNQ ACLDHTFSLK RATCLVNPRA 360
  361 CYETEINFLP TSKKKRIAVM GAGPAGMAFS VYAAMRGHEV VLFEAKSEVG GQFNLARKIP 420
  421 GKEEFNETIR YFLNQIKLHK IDLRLNTRLD AKVLETEKFD EIVIASGVVP RELSLPGFDS 480
  481 PKVVDYQQVL TGQALVGGKV ALIGAGGIGF DMAHYLCESE SSTLNPDKWL KQWGIDKQYQ 540
  541 HAGGLTQPEV ENTDHRQVYL LQRKTSKMGQ GLGKTTGWIH RLVLKQHDVK MKMGVSYEKF 600
  601 DDAGLHIRVG EQVEVLAVDN VILCAGQESN RTLVDEMKAS GIPVHLIGGV DVAAELDAKR 660
  661 AIRQGAELAM RL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	132.0
Match:	1ps9A
Description:	The Crystal Structure and Reaction Mechanism of E. coli 2,4-Dienoyl CoA Reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits