YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348403, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348403, gi|....

Description	E-value	Query Range	Subject Range
gi\|229811380, gi... - gi\|229845694\|ref\|ZP_04465817.1\| phosphoglycolate phosphatase [Haemophilus influenzae 6P18H1], gi\|229... gi\|144985848, gi... - gi\|145633479\|ref\|ZP_01789208.1\| phosphoglycolate phosphatase [Haemophilus influenzae 3655], gi\|14498... GPH_HAEI8 - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI0697 PE=3 SV=1	179.0	[0..1]	[218..1]
gi\|145272121, gi... - gi\|145638526\|ref\|ZP_01794135.1\| phosphoglycolate phosphatase [Haemophilus influenzae PittII], gi\|145... gi\|53733330 - gi\|53733330\|ref\|ZP_00156383.2\| COG0546: Predicted phosphatases [Haemophilus influenzae R2866]	177.0	[0..1]	[218..1]
gi\|88790279, gi\|... - gi\|88812493\|ref\|ZP_01127742.1\| 2-phosphoglycolate phosphatase [Nitrococcus mobilis Nb-231], gi\|88790...	177.0	[0..3]	[220..2]
GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) G... GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae GN=gph PE=3 SV=1	177.0	[0..1]	[218..1]
GPH_PASMU - Phosphoglycolate phosphatase OS=Pasteurella multocida (strain Pm70) GN=gph PE=3 SV=1 GPH_PASMU - Phosphoglycolate phosphatase OS=Pasteurella multocida GN=gph PE=3 SV=1	177.0	[0..3]	[219..1]
gi\|194547119, gi... - gi\|84319999\|ref\|ZP_00968385.1\| COG0546: Predicted phosphatases [Pseudomonas aeruginosa C3719], gi\|25...	174.0	[0..1]	[222..1]
gi\|88795676, gi\|... - gi\|88795676\|ref\|ZP_01111369.1\| phosphoglycolate phosphatase [Alteromonas macleodii 'Deep ecotype'], ...	174.0	[0..1]	[217..1]
GPH2_PSEAE - Phosphoglycolate phosphatase 2 OS=Pseudomonas aeruginosa GN=gph2 PE=3 SV=1 GPH2_PSEAE - Phosphoglycolate phosphatase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / ...	174.0	[0..1]	[222..1]
gi\|126195238, gi... - gi\|84326080\|ref\|ZP_00974110.1\| COG0546: Predicted phosphatases [Pseudomonas aeruginosa 2192], gi\|254... gi\|115586382, gi... - gi\|116051161\|ref\|YP_790008.1\| phosphoglycolate phosphatase [Pseudomonas aeruginosa UCBPP-PA14], gi\|1... gi\|218770859, gi... - gi\|218890636\|ref\|YP_002439500.1\| phosphoglycolate phosphatase [Pseudomonas aeruginosa LESB58], gi\|21... gi\|107102702 - gi\|107102702\|ref\|ZP_01366620.1\| hypothetical protein PaerPA_01003768 [Pseudomonas aeruginosa PACS2]	173.0	[0..1]	[222..1]
gi\|55247209, gi\|... - gi\|57965748\|ref\|XP_561314.1\| ENSANGP00000026891 [Anopheles gambiae str. PEST], gi\|55247209\|gb\|EAL423...	173.0	[0..4]	[218..11]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSEIKGVL FDLDGTLADT APDLVEALNL SLRDVGIAAK PLAAMRSAAS HGSFALVDAA  60
   61 IPDADETLRT QVQQGLLIHY QRINGEHCQL FAGIAPLLDW LELHSVPFGV ITNKPARFTR 120
  121 PLLNKLKLTA RMSVVISGDS TRYAKPHTAP MLLGAQQLQC KPHQILYLGD AERDLLAAQA 180
  181 AGMLGGVALW GYLSATDTPS TWPAYAHYPS PLCLHTALSQ ALAKISQQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2hszA
Description:	No description for 2hszA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.92340854382984	bayes_pls_golite062009
hydrolase activity	0.971660704234215	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: