YRC Public Data Repository - Protein Structure Prediction

Protein:	UBIG_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBIG_SHEON.

Description	E-value	Query Range	Subject Range
gi\|124547268, gi... - gi\|124547268\|ref\|ZP_01706215.1\| ubiquinone biosynthesis O-methyltransferase [Shewanella putrefaciens... UBIG_SHEPC - Ubiquinone biosynthesis O-methyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)...	196.0	[0..1]	[236..1]
UBIG_SHESW - Ubiquinone biosynthesis O-methyltransferase OS=Shewanella sp. (strain W3-18-1) GN=ubiG PE=3 SV=1	196.0	[0..1]	[236..1]
gi\|90581241, gi\|... - gi\|90581241\|ref\|ZP_01237039.1\| 3-demethylubiquinone-9 3-methyltransferase [Vibrio angustum S14], gi\|...	193.0	[0..1]	[236..1]
UBIG_VIBPA - 3-demethylubiquinone-9 3-methyltransferase OS=Vibrio parahaemolyticus GN=ubiG PE=3 SV=1 UBIG_VIBPA - Ubiquinone biosynthesis O-methyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2...	193.0	[0..1]	[234..1]
UBIG_VIBF1 - Ubiquinone biosynthesis O-methyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ubiG ...	192.0	[0..1]	[231..1]
UBIG_VIBVU - 3-demethylubiquinone-9 3-methyltransferase OS=Vibrio vulnificus GN=ubiG PE=3 SV=1 UBIG_VIBVY - Ubiquinone biosynthesis O-methyltransferase OS=Vibrio vulnificus (strain YJ016) GN=ubiG PE=3 SV=1 UBIG_VIBVU - Ubiquinone biosynthesis O-methyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=ubiG PE=3 SV=1	192.0	[0..1]	[234..1]
UBIG_BORA1 - Ubiquinone biosynthesis O-methyltransferase OS=Bordetella avium (strain 197N) GN=ubiG PE=3 SV=1	191.0	[0..4]	[234..11]
UBIG_SHEB8 - Ubiquinone biosynthesis O-methyltransferase OS=Shewanella baltica (strain OS185) GN=ubiG PE=3 SV=1 UBIG_SHEB2 - Ubiquinone biosynthesis O-methyltransferase OS=Shewanella baltica (strain OS223) GN=ubiG PE=3 SV=1 UBIG_SHEB9 - Ubiquinone biosynthesis O-methyltransferase OS=Shewanella baltica (strain OS195) GN=ubiG PE=3 SV=1 UBIG_SHEB5 - Ubiquinone biosynthesis O-methyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=...	191.0	[0..1]	[236..1]
gi\|127512876, gi... - gi\|78368843\|ref\|ZP_00839044.1\| Ubiquinone biosynthesis O-methyltransferase [Shewanella sp. PV-4], gi...	191.0	[0..2]	[236..27]
gi\|78504043, gi\|... - gi\|78688222\|ref\|ZP_00852936.1\| Ubiquinone biosynthesis O-methyltransferase [Shewanella sp. ANA-3], g...	191.0	[0..1]	[236..39]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQNTNVDPQ EIAKFERMAE TWWDLNGEFK PLHLLNPLRL NYIDQTAGGI FGKKVLDVGC  60
   61 GGGILSESMA RIGAIVDGLD MGEEPLEVAR LHALETGVSI NYVKNTAEAH REDHREYYDV 120
  121 VTCMEMLEHV PDPQSVIQAC CDMVKPGGFV FFSTINRNVR SFVETIIGAE YLLKMLPIGT 180
  181 HDHNKFIKPS ELIDLVDNTE LICKDALGIT YNPLTGIFKY TSKVDVNYMI ATQKVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.154902
Match:	2fk7A
Description:	Crystal structure of Hma (MmaA4) from Mycobacterium tuberculosis, apo-form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
binding	0.109975487409217	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: