YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348391, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348391, gi|....

Description	E-value	Query Range	Subject Range
gi\|205346904, gi... - gi\|205346904\|gb\|EDZ33535.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Hada... gi\|168243767, gi... - gi\|205337174\|gb\|EDZ23938.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Heid... gi\|205327270, gi... - gi\|205327270\|gb\|EDZ14034.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar 4,[5... gi\|205322469, gi... - gi\|205322469\|gb\|EDZ10308.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Sain... AAT_SALTY - Aspartate aminotransferase OS=Salmonella typhimurium GN=aspC PE=3 SV=1 AAT_SALTY - Aspartate aminotransferase OS=Salmonella typhimurium GN=aspC PE=3 SV=1 AAT_SALTY - Aspartate aminotransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=aspC P... gi\|207856389, gi... - gi\|207856389\|ref\|YP_002243040.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... lcl\|NC_016856.1_... - [gene=aspC] [protein=aromatic amino acid aminotransferase] [protein_id=YP_005236718.1] [location=com... gi\|197250328, gi... - gi\|197250328\|ref\|YP_002145916.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar... gi\|194450741, gi... - gi\|194450741\|ref\|YP_002044990.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... gi\|194404393, gi... - gi\|194445730\|ref\|YP_002040196.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar... gi\|205341503, gi... - gi\|205341503\|gb\|EDZ28267.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Welt... gi\|205271986, gi... - gi\|205352205\|ref\|YP_002226006.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... gi\|204930064, gi... - gi\|204930064\|ref\|ZP_03221085.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar ... gi\|197936495, gi... - gi\|198241979\|ref\|YP_002214922.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar... gi\|197262193, gi... - gi\|197262193\|ref\|ZP_03162267.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar ...	340.0	[0..1]	[396..1]
gi\|16759867 - gi\|16759867\|ref\|NP_455484.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. enteri... gi\|213581706 - gi\|213581706\|ref\|ZP_03363532.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. ent... gi\|213420563 - gi\|213420563\|ref\|ZP_03353629.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. ent... AAT_SALTI - Aspartate aminotransferase OS=Salmonella typhi GN=aspC PE=3 SV=2 gi\|29137990, gi\|... - gi\|29142360\|ref\|NP_805702.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. enteri... gi\|213852477 - gi\|213852477\|ref\|ZP_03382009.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. ent... AAT_SALTI - Aspartate aminotransferase OS=Salmonella typhi GN=aspC PE=3 SV=2 gi\|213160799 - gi\|213160799\|ref\|ZP_03346509.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. ent...	339.0	[0..1]	[396..1]
gi\|197362876, gi... - gi\|197362876\|ref\|YP_002142513.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... gi\|56413953, gi\|... - gi\|56413953\|ref\|YP_151028.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. enteri...	339.0	[0..1]	[396..1]
gi\|62127158, gi\|... - gi\|62179525\|ref\|YP_215942.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. enteri...	339.0	[0..1]	[396..1]
gi\|223867 - gi\|223867\|prf\|\|1003180A aminotransferase,Asp	339.0	[0..2]	[395..4]
AATM_MOUSE - Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1	338.0	[0..2]	[395..33]
gi\|42629643 - gi\|42629643\|ref\|ZP_00155189.1\| COG1448: Aspartate/tyrosine/aromatic aminotransferase [Haemophilus in...	337.0	[0..1]	[396..1]

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Predicted Domain #1

Region A:
Residues: [1-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNSLIAMPA DPILGLLTQY REDTHPQKVD LGVGVYKDPA GNTPILNCVK KAEKFRLETE  60
   61 TTKVYIGPTG SPQFNTLMTE LAFGSDHSAI IANRIRTVST PGGTGALRVA GDFIKRCNPN 120
  121 AVLWVSDPTW ANHTGLFEAA GITVKTYPYY DYDSKSLKFD EMLAALSQVS PDDVVLLHAC 180
  181 CHNPSGMDLT TDQWDKVVTL TKEQGFTPLI DMAYQGFGDG VDIDAYGVRK MAAAVDNMIL 240
  241 CSSCSKNFGL YRERIGSCSV VAKDANTANI AQSVLLYVVR CLYSMPPAHG AAIVETILGS 300
  301 KELTQEWLDE LKVMRDRING NRAILVEKLK ANGVARDFSF IARQKGMFSF LGVNPEQVAR 360
  361 LQKEFSIYMV GSSRISIAGI SEDNVDYLAQ SIAKVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.221849
Match:	1aawA
Description:	THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE R292D ACTIVE SITE MUTANT OF ASPARTATE AMINOTRANSFERASE FROM E. COLI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits