YRC Public Data Repository - Protein Structure Prediction

Protein:	AROA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|84388492, gi\|... - gi\|84388492\|ref\|ZP_00991039.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio splendidus 12B01...	521.0	[0..1]	[424..1]
AROA_VIBPA - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio parahaemolyticus GN=aroA PE=3 SV=1 gi\|149748099, gi... - gi\|153838532\|ref\|ZP_01991199.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio parahaemolyticu... AROA_VIBPA - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD ...	520.0	[0..1]	[424..1]
gi\|85835719, gi\|... - gi\|86146456\|ref\|ZP_01064779.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio sp. MED222], gi\|...	519.0	[0..1]	[424..1]
AROA_VIBVY - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio vulnificus (strain YJ016) GN=aroA PE=3 SV=1	510.0	[0..1]	[424..1]
gi\|90326950, gi\|... - gi\|90412226\|ref\|ZP_01220232.1\| putative 3-phosphoshikimate 1-carboxyvinyltransferase [Photobacterium...	506.0	[0..1]	[424..1]
AROA_PHOPR - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Photobacterium profundum (strain SS9) GN=aroA PE=3 S... AROA_PHOPR - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Photobacterium profundum GN=aroA PE=3 SV=1	505.0	[0..1]	[424..1]
AROA_PHODP - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Photobacterium damsela subsp. piscicida GN=aroA PE=3...	505.0	[0..1]	[424..1]
gi\|116220055, gi... - gi\|75819312\|ref\|ZP_00749398.1\| COG0128: 5-enolpyruvylshikimate-3-phosphate synthase [Vibrio cholerae...	503.0	[0..1]	[424..1]
gi\|229355665, gi... - gi\|229508160\|ref\|ZP_04397665.1\| 5-Enolpyruvylshikimate-3-phosphate synthase [Vibrio cholerae BX 3302... AROA_VIBCM - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=aroA P... gi\|229607735, gi... - gi\|229607735\|ref\|YP_002878383.1\| 5-Enolpyruvylshikimate-3-phosphate synthase [Vibrio cholerae MJ-123... gi\|229518740, gi... - gi\|229518740\|ref\|ZP_04408183.1\| 5-Enolpyruvylshikimate-3-phosphate synthase [Vibrio cholerae RC9], g... AROA_VIBCH - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae GN=aroA PE=1 SV=1 gi\|254848849, gi... - gi\|254848849\|ref\|ZP_05238199.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio cholerae MO10],... gi\|148876511, gi... - gi\|153827930\|ref\|ZP_01980597.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio cholerae 623-39... AROA_VIBCH - 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El ... gi\|124118273, gi... - gi\|153223309\|ref\|ZP_01953782.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio cholerae MAK 75... gi\|121585832, gi... - gi\|121585832\|ref\|ZP_01675626.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio cholerae 2740-8... gi\|153819071, gi... - gi\|153819071\|ref\|ZP_01971738.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio cholerae NCTC 8... gi\|153802166, gi... - gi\|153802166\|ref\|ZP_01956752.1\| 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio cholerae MZO-3]... gi\|153822783, gi... - gi\|229511601\|ref\|ZP_04401080.1\| 5-Enolpyruvylshikimate-3-phosphate synthase [Vibrio cholerae B33], g...	503.0	[0..1]	[424..1]
gi\|1781351\|emb\|C... - 5-enolpyruvylshikimate-3-phosphate synthase, EC 2.5.1.19, aroA [Salmonella typhimurium] gi\|1781351, gi\|1... - pir\|\|XUEBVS 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) - Salmonella typhimurium, gi...	503.0	[0..1]	[424..1]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLRLEPVV QVRGEINIPG SKSISNRALL LATLAQGTTT LTNLLDSDDI RHMLASLKQL  60
   61 GVEYRLSHNN TVCELAGLGG VMSSKQAQTL FLGNAGTAMR PLCAALTLGQ GEFTLTGEPR 120
  121 MEERPIGDLV DALRQLGANI VYLKNDGFPP LTINATGLNG GDVEIVGDLS SQFLTALLMV 180
  181 APLAKGSVNI HVKGELVSKP YIDITLALMA QFGVKVINHH YARFEIPAGQ HYVSPGKVLV 240
  241 EGDASSASYF LAAGAIKGGE VKVTGVGRLS IQGDVKFADV LEKMGADIEW GDDYIIARGA 300
  301 PLTAVDLDMN HIPDAAMTIA TAALFAKGTT VIRNIYNWRI KETDRLAAMA TELRKVGAEV 360
  361 EEGNDYIKIT PPAVLNTAQI DTYNDHRMAM CFSMLAFADC GITINDPDCT SKTFPDYFVQ 420
  421 FASLKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	140.0
Match:	1g6sA
Description:	5-enol-pyruvyl shikimate-3-phosphate(EPSP) synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-phosphoshikimate 1-carboxyvinyltransferase activity	4.6363282422962	bayes_pls_golite062009
UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity	3.87711259634234	bayes_pls_golite062009
catalytic activity	2.91733519293428	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	2.15049036934665	bayes_pls_golite062009
transferase activity	1.9014276549152	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: