YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373937, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	437 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373937, gi|....

Description	E-value	Query Range	Subject Range
gi\|121591497, gi... - gi\|121591497\|ref\|ZP_01678766.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholera... gi\|153217101, gi... - gi\|153217101\|ref\|ZP_01950865.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholera... gi\|124117413, gi... - gi\|153224980\|ref\|ZP_01954662.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholera... gi\|229508695, gi... - gi\|229508695\|ref\|ZP_04398189.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholera... gi\|15640342, gi\|... - gi\|9654728\|gb\|AAF93488.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholerae O1 b... gi\|11262006 - pir\|\|A82337 CDP-diacylglycerol-serine O-phosphatidyltransferase VC0315 [imported] - Vibrio cholerae ... gi\|227080527, gi... - gi\|227080527\|ref\|YP_002809078.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio choler... gi\|254847330, gi... - gi\|75828717\|ref\|ZP_00758067.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ... gi\|229506890, gi... - gi\|229506890\|ref\|ZP_04396398.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholera... gi\|75828301, gi\|... - gi\|75828301\|ref\|ZP_00757736.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ... gi\|229350404, gi... - gi\|229512622\|ref\|ZP_04402092.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholera... gi\|121628135, gi... - gi\|75814307\|ref\|ZP_00744915.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ... gi\|229516076, gi... - gi\|229516076\|ref\|ZP_04405527.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholera... gi\|229343162, gi... - gi\|229519824\|ref\|ZP_04409260.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholera... gi\|229335548, gi... - gi\|229527025\|ref\|ZP_04416421.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio cholera... gi\|229606403, gi... - gi\|229606403\|ref\|YP_002877051.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio choler...	339.0	[0..2]	[437..8]
gi\|27364601, gi\|... - gi\|27364601\|ref\|NP_760129.1\| phosphatidylserine synthase [Vibrio vulnificus CMCP6], gi\|27360720\|gb\|A... gi\|37200108, gi\|... - gi\|37681356\|ref\|NP_935965.1\| phosphatidylserine synthase [Vibrio vulnificus YJ016], gi\|37200108\|dbj\|...	332.0	[0..3]	[437..9]
gi\|8307763 - gi\|8307763\|gb\|AAF74310.1\|AF070946_1 phosphatidylserine synthase [Vibrio parahaemolyticus]	329.0	[0..3]	[437..9]
gi\|91187492, gi\|... - gi\|91228948\|ref\|ZP_01262844.1\| phosphatidylserine synthase [Vibrio alginolyticus 12G01], gi\|91187492...	329.0	[0..3]	[437..9]
gi\|254229784, gi... - gi\|75854778\|ref\|ZP_00762452.1\| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin ...	327.0	[0..3]	[437..9]
gi\|28807960 - gi\|28807960\|dbj\|BAC61197.1\| phosphatidylserine synthase [Vibrio parahaemolyticus RIMD 2210633] gi\|28899708, gi\|... - gi\|28899708\|ref\|NP_799313.1\| phosphatidylserine synthase [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|153839946, gi... - gi\|153839946\|ref\|ZP_01992613.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Vibrio parahae...	326.0	[0..3]	[437..9]
gi\|59481136, gi\|... - gi\|59713035\|ref\|YP_205811.1\| phosphatidylserine synthase [Vibrio fischeri ES114], gi\|59481136\|gb\|AAW...	319.0	[0..2]	[437..12]
gi\|86148785, gi\|... - gi\|86148785\|ref\|ZP_01067054.1\| phosphatidylserine synthase [Vibrio sp. MED222], gi\|85833423\|gb\|EAQ51...	316.0	[0..4]	[437..10]
gi\|84377444, gi\|... - gi\|84387761\|ref\|ZP_00990777.1\| phosphatidylserine synthase [Vibrio splendidus 12B01], gi\|84377444\|gb...	314.0	[0..4]	[437..10]
gi\|54310510, gi\|... - gi\|54310510\|ref\|YP_131530.1\| phosphatidylserine synthase [Photobacterium profundum SS9], gi\|46914953...	312.0	[0..2]	[437..11]

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Predicted Domain #1

Region A:
Residues: [1-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDKLGGIAV QPEALTWLLT PCRFKAELLT RIENAKTSIY IAALYLEDDE AGREILQVLM  60
   61 TAKANNPALD IKVLVDFHRA RRGLIGHKGD SGNYLMYRKV MAEAKHPIEI MGVPVKSREF 120
  121 MGVLHLKGFV IDDAVIYSGA SLNNIYLQQN DKYRFDRYHV IESAELARSM RAMIQRYIIA 180
  181 DPAVTSLTQD AQQEVLPPKT DVRSFKLRLS QAQYEFNETR SGNRVTPLLG LGRKHNLLNK 240
  241 TVIAMVEESK DRLFICTPYF NPPYILVRAL AKHLRKGKRI DIVVGDKTAN DFYIPPEQDF 300
  301 STIGALPYLY EQSLRKFAKR QQWAIDNGQL NIHLWKHGIN SYHLKGISTD GRKHLITGSN 360
  361 LNPRAWALDL ENGILIHDET GSWKAQFEAE QAHILEHTQR LYHYSQVDTL QSYPDPVKKI 420
  421 MNRIRRLKAD FLLRRIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1f0iA
Description:	Phospholipase D
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.66280208217584	bayes_pls_golite062009
phosphoric diester hydrolase activity	1.06227220880142	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.27587835691419	bayes_pls_golite062009
binding	0.083118598011965	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: