YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348319, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348319, gi|....

Description	E-value	Query Range	Subject Range
gi\|223867 - gi\|223867\|prf\|\|1003180A aminotransferase,Asp	343.0	[0..3]	[396..4]
AATM_MOUSE - Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1	343.0	[0..3]	[396..33]
gi\|205346904, gi... - gi\|205346904\|gb\|EDZ33535.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Hada... gi\|168243767, gi... - gi\|205337174\|gb\|EDZ23938.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Heid... gi\|205327270, gi... - gi\|205327270\|gb\|EDZ14034.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar 4,[5... gi\|205322469, gi... - gi\|205322469\|gb\|EDZ10308.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Sain... AAT_SALTY - Aspartate aminotransferase OS=Salmonella typhimurium GN=aspC PE=3 SV=1 AAT_SALTY - Aspartate aminotransferase OS=Salmonella typhimurium GN=aspC PE=3 SV=1 AAT_SALTY - Aspartate aminotransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=aspC P... gi\|207856389, gi... - gi\|207856389\|ref\|YP_002243040.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... lcl\|NC_016856.1_... - [gene=aspC] [protein=aromatic amino acid aminotransferase] [protein_id=YP_005236718.1] [location=com... gi\|197250328, gi... - gi\|197250328\|ref\|YP_002145916.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar... gi\|194450741, gi... - gi\|194450741\|ref\|YP_002044990.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... gi\|194404393, gi... - gi\|194445730\|ref\|YP_002040196.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar... gi\|205341503, gi... - gi\|205341503\|gb\|EDZ28267.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar Welt... gi\|205271986, gi... - gi\|205352205\|ref\|YP_002226006.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... gi\|204930064, gi... - gi\|204930064\|ref\|ZP_03221085.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar ... gi\|197936495, gi... - gi\|198241979\|ref\|YP_002214922.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar... gi\|197262193, gi... - gi\|197262193\|ref\|ZP_03162267.1\| aspartate transaminase [Salmonella enterica subsp. enterica serovar ...	341.0	[0..2]	[397..1]
gi\|16759867 - gi\|16759867\|ref\|NP_455484.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. enteri... gi\|213581706 - gi\|213581706\|ref\|ZP_03363532.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. ent... gi\|213420563 - gi\|213420563\|ref\|ZP_03353629.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. ent... AAT_SALTI - Aspartate aminotransferase OS=Salmonella typhi GN=aspC PE=3 SV=2 gi\|29137990, gi\|... - gi\|29142360\|ref\|NP_805702.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. enteri... gi\|213852477 - gi\|213852477\|ref\|ZP_03382009.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. ent... AAT_SALTI - Aspartate aminotransferase OS=Salmonella typhi GN=aspC PE=3 SV=2 gi\|213160799 - gi\|213160799\|ref\|ZP_03346509.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. ent...	341.0	[0..2]	[397..1]
gi\|46133371 - gi\|46133371\|ref\|ZP_00157086.2\| COG1448: Aspartate/tyrosine/aromatic aminotransferase [Haemophilus in...	341.0	[0..2]	[397..1]
gi\|197362876, gi... - gi\|197362876\|ref\|YP_002142513.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. en... gi\|56413953, gi\|... - gi\|56413953\|ref\|YP_151028.1\| aromatic amino acid aminotransferase [Salmonella enterica subsp. enteri...	341.0	[0..2]	[397..1]
gi\|42629643 - gi\|42629643\|ref\|ZP_00155189.1\| COG1448: Aspartate/tyrosine/aromatic aminotransferase [Haemophilus in...	340.0	[0..2]	[397..1]

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Predicted Domain #1

Region A:
Residues: [1-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFSQVVLAP ADPILGLTDT FKADPRQDKV NLGVGIYKDE AGQTPVLQSV KKAEAILLEQ  60
   61 EKTKNYLGIE GVQTYNRVVQ ELLFGEGSEL VASGRAATAQ APGGTGALRI AAEFLLRNTP 120
  121 SRTIWVSNPT WANHQNIFET AGLTVKEFGY YNASAHDIDF DGMMTDLANA QAGDIILLHG 180
  181 CCHNPTGIDL TLAQWDLVAN LCADKQLVPL FDFAYQGFGT GIEEDAAGLR LVASKVPELL 240
  241 VANSFSKNFG LYNERIGAVT VVAHNADEAV RAFSQVKRTI RANYSNPPAH GALIVSTILS 300
  301 DAALKALWVQ ELTEMRERIA LMRTLFVQSL KDEGVTQDFS FISRQNGMFS FSGLNKSQVA 360
  361 RLKDEFGVYI VGSGRISVAG MTKANMPAIC KAIAQVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.30103
Match:	1aawA
Description:	THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE R292D ACTIVE SITE MUTANT OF ASPARTATE AMINOTRANSFERASE FROM E. COLI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits