YRC Public Data Repository - Protein Structure Prediction

Protein:	NADA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	357 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADA_SHEON.

Description	E-value	Query Range	Subject Range
NADA_SHESM - Quinolinate synthase A OS=Shewanella sp. (strain MR-4) GN=nadA PE=3 SV=1	551.0	[0..1]	[357..1]
NADA_SHESA - Quinolinate synthase A OS=Shewanella sp. (strain ANA-3) GN=nadA PE=3 SV=1	551.0	[0..1]	[357..1]
gi\|120559021, gi... - gi\|82742286\|ref\|ZP_00904984.1\| Quinolinate synthetase A [Shewanella sp. W3-18-1], gi\|82720370\|gb\|EAP... gi\|145564676, gi... - gi\|77812797\|ref\|ZP_00812080.1\| Quinolinate synthetase A [Shewanella putrefaciens CN-32], gi\|77812030...	550.0	[0..6]	[357..9]
NADA_SHESR - Quinolinate synthase A OS=Shewanella sp. (strain MR-7) GN=nadA PE=3 SV=1	550.0	[0..1]	[357..1]
gi\|68544343, gi\|... - gi\|68544343\|ref\|ZP_00583998.1\| Quinolinate synthetase A [Shewanella baltica OS155], gi\|68517964\|gb\|E... gi\|151365294, gi... - gi\|153000676\|ref\|YP_001366357.1\| quinolinate synthetase [Shewanella baltica OS185], gi\|151365294\|gb\|...	546.0	[0..6]	[357..4]
gi\|113951261, gi... - gi\|160875315\|ref\|YP_001554631.1\| quinolinate synthetase [Shewanella baltica OS195], gi\|160860837\|gb\|...	546.0	[0..6]	[357..9]
gi\|78359010, gi\|... - gi\|78368964\|ref\|ZP_00839150.1\| Quinolinate synthetase A [Shewanella sp. PV-4], gi\|78359010\|gb\|EAP008...	541.0	[0..1]	[357..1]
gi\|119767348, gi... - gi\|68548456\|ref\|ZP_00587958.1\| Quinolinate synthetase A [Shewanella amazonensis SB2B], gi\|68513853\|g...	538.0	[0..7]	[357..5]
gi\|114563109, gi... - gi\|69952031\|ref\|ZP_00639610.1\| Quinolinate synthetase A [Shewanella frigidimarina NCIMB 400], gi\|691...	535.0	[0..4]	[357..2]
NADA_ECOSE - Quinolinate synthase A OS=Escherichia coli (strain SE11) GN=nadA PE=3 SV=1 NADA_ECO8A - Quinolinate synthase A OS=Escherichia coli O8 (strain IAI1) GN=nadA PE=3 SV=1 gi\|75235767 - gi\|75235767\|ref\|ZP_00719922.1\| COG0379: Quinolinate synthase [Escherichia coli E110019] gi\|75209081 - gi\|75209081\|ref\|ZP_00709339.1\| COG0379: Quinolinate synthase [Escherichia coli B171] NADA_ECO24 - Quinolinate synthase A OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nadA PE=3 SV=1 NADA_ECO55 - Quinolinate synthase A OS=Escherichia coli (strain 55989 / EAEC) GN=nadA PE=3 SV=1	532.0	[0..3]	[350..2]

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Predicted Domain #1

Region A:
Residues: [1-357]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLFAPTI ETIDYPFPPK PVPLSDAQKA DYKARIKQLL IEKDAVLVAH YYTDPEIQAL  60
   61 AEETGGCVSD SLEMARFGRD HPAKTLIVAG VKFMGETAKI LSPEKTILMP TLEATCSLDL 120
  121 GCPIDKFSAF CDAHPDHTVV VYANTSAAVK ARADWVVTSS IALEIVEHLD SEGKKIIWGP 180
  181 DRHLGSYIAK QTGAEMLMWQ GDCIVHDEFK ANALRDLKSV YPDAAILVHP ESPASVVAMA 240
  241 DAVGSTSQLI KAAQTMPNER FIVATDRGIF YKMQQAAPGK TLIEAPTGGN GATCKSCAHC 300
  301 PWMAMNGLKA IEASLSNSDK TTHEIFVDED LRVKALIPLT RMLDFAKTLN MKVKGNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	1wzuA
Description:	Crystal structure of quinolinate synthase (nadA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
quinolinate synthetase A activity	13.6613396373416	bayes_pls_golite062009
catalytic activity	1.94308403509017	bayes_pls_golite062009
binding	0.5033130924527	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: