YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348306, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	325 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348306, gi|....

Description	E-value	Query Range	Subject Range
gi\|88796980, gi\|... - gi\|88796980\|ref\|ZP_01112570.1\| 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, e...	341.0	[0..1]	[325..1]
gi\|85774761, gi\|... - gi\|86158250\|ref\|YP_465035.1\| branched-chain alpha-keto acid dehydrogenase E1 component [Anaeromyxoba...	341.0	[0..1]	[325..1]
gi\|109898354, gi... - gi\|76790938\|ref\|ZP_00773446.1\| Transketolase, central region:Transketolase, C terminal [Pseudoaltero...	339.0	[0..1]	[325..1]
gi\|88796575, gi\|... - gi\|88796575\|ref\|ZP_01112239.1\| 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, e...	338.0	[0..1]	[325..1]
gi\|119767346, gi... - gi\|68548454\|ref\|ZP_00587956.1\| Transketolase, central region:Transketolase, C terminal [Shewanella a...	337.0	[0..1]	[325..1]
gi\|77955819, gi\|... - gi\|77955819\|ref\|ZP_00820155.1\| alpha keto acid dehydrogenase complex, E1 component, beta subunit [Ma...	337.0	[0..1]	[325..16]
gi\|125999800, gi... - gi\|68544341\|ref\|ZP_00583996.1\| Transketolase, central region:Transketolase, C terminal [Shewanella b... gi\|160860835, gi... - gi\|160875313\|ref\|YP_001554629.1\| transketolase central region [Shewanella baltica OS195], gi\|1608608... gi\|217973405, gi... - gi\|217973405\|ref\|YP_002358156.1\| Transketolase central region [Shewanella baltica OS223], gi\|2174985...	333.0	[0..1]	[325..1]
gi\|87119955, gi\|... - gi\|87119955\|ref\|ZP_01075851.1\| 2-oxoisovalerate dehydrogenase complex, E1 component, beta subunit [M...	332.0	[0..1]	[325..1]
gi\|88818197, gi\|... - gi\|88860203\|ref\|ZP_01134842.1\| 2-oxoisovalerate dehydrogenase beta subunit (Branched-chain alpha-ket...	332.0	[0..1]	[325..1]
gi\|82742288, gi\|... - gi\|82742288\|ref\|ZP_00904986.1\| alpha keto acid dehydrogenase complex, E1 component, beta subunit [Sh...	332.0	[0..1]	[325..1]

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Predicted Domain #1

Region A:
Residues: [1-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEMNMLQAV NEALSIAMQA DERMVVFGED VGHFGGVFRA TSGLQEKFGR ARCFNTPLTE  60
   61 QGIAGFANGL ASNGMTAVAE IQFADYIFPA FDQIVNESAK FRYRSGNEFN VGSLVFRTPY 120
  121 GGGIAGGHYH SQSPEAYFTQ TPGLKVVVPR NPAQAKGLLL ASIRDKNPVV FFEPKRLYRA 180
  181 SVGDVPAGDY EIELGKAEVL REGKDITLVA WGAQMEIIEK AADMAAKEGI SCEIIDLRTL 240
  241 APWDVNTVAD SVKKTGRLLV NHEAPLTGGF AGEIAATIQQ ECFLYLESPI SRVCGLDTPY 300
  301 PLVHEKEYMP DALKTFEAIK ASVNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.0
Match:	1dtwB
Description:	Branched-chain alpha-keto acid dehydrogenase, Pyr module; Branched-chain alpha-keto acid dehydrogenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits