YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348305, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	392 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348305, gi|....

Description	E-value	Query Range	Subject Range
gi\|117612907, gi... - gi\|78688165\|ref\|ZP_00852883.1\| 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) [Shewanella sp. ANA...	304.0	[0..1]	[392..1]
gi\|127512853, gi... - gi\|78368961\|ref\|ZP_00839147.1\| 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) [Shewanella sp. PV-...	302.0	[0..1]	[389..1]
gi\|78508356, gi\|... - gi\|78692244\|ref\|ZP_00856802.1\| 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) [Shewanella sp. MR-...	302.0	[0..1]	[392..1]
gi\|69164474, gi\|... - gi\|69952028\|ref\|ZP_00639607.1\| 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) [Shewanella frigidi...	301.0	[0..1]	[392..1]
gi\|113970365, gi... - gi\|82498476\|ref\|ZP_00883971.1\| 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) [Shewanella sp. MR-...	299.0	[0..1]	[392..1]
gi\|151365291, gi... - gi\|153000673\|ref\|YP_001366354.1\| 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferri... gi\|77812794, gi\|... - gi\|77812794\|ref\|ZP_00812077.1\| 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) [Shewanella putrefa... gi\|124509764, gi... - gi\|124546712\|ref\|ZP_01705747.1\| dehydrogenase, E1 component [Shewanella putrefaciens 200], gi\|124509... gi\|120559024, gi... - gi\|82742289\|ref\|ZP_00904987.1\| 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) [Shewanella sp. W3-...	299.0	[0..1]	[392..1]
gi\|109461422 - gi\|109461422\|ref\|XP_001070046.1\| PREDICTED: similar to 2-oxoisovalerate dehydrogenase alpha subunit,...	298.0	[0..6]	[386..92]
gi\|114677439 - gi\|114677439\|ref\|XP_001150231.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	298.0	[0..6]	[386..91]
gi\|160875312, gi... - gi\|160875312\|ref\|YP_001554628.1\| 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferri...	298.0	[0..1]	[392..1]
gi\|109124899 - gi\|109124899\|ref\|XP_001101679.1\| PREDICTED: similar to branched chain keto acid dehydrogenase E1, al...	298.0	[0..6]	[386..91]

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Predicted Domain #1

Region A:
Residues: [1-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKATLNTDT VHRVGFLDKA SLHIPILRIL QADGTTYETA VLPVIDEALA IKIYDTCVFT  60
   61 RVLDERMLGA QRQGRISFYM TCTGEEAAIV GSVAALDPED VILAQYREHA ALRYRGFTTE 120
  121 QFMNQMFSNE KDLGKGRQMP IHYGCAALNY QTISSPLATQ IPQATGVGYS LKMQGKRNVA 180
  181 VCYFGEGAAS EGDFHAGLNM AAVLKCPVIF FCRNNGYAIS TPTEEQFAGN GIASRGVGYG 240
  241 MHTIRVDGND MLAVLAATQQ ARAYAIEHNA PVLIEAMTYR LGAHSSSDDP SGYRSKEEEA 300
  301 KWQQHDPVKR FKLWLINKGW LAEADDAQRY EKYREEVLAA VKVAEKLPIP MLDEIIEDVY 360
  361 DKPTPALKKQ LSELKEHIKK YPQSYPKSAG RL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.522879
Match:	2j9fA
Description:	No description for 2j9fA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits