YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348303, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348303, gi|....

Description	E-value	Query Range	Subject Range
gi\|86607734 - gi\|86607734\|ref\|YP_476496.1\| methionine-S-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B... gi\|86556276, gi\|... - gi\|86607734\|ref\|YP_476496.1\| methionine-S-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g...	273.0	[0..1]	[158..50]
gi\|22294607, gi\|... - gi\|22298428\|ref\|NP_681675.1\| methionine sulfoxide reductase A [Thermosynechococcus elongatus BP-1], ...	272.0	[0..1]	[157..48]
gi\|86605185, gi\|... - gi\|86605185\|ref\|YP_473948.1\| methionine-S-sulfoxide reductase [Cyanobacteria bacterium Yellowstone A... gi\|86605185, gi\|... - gi\|86605185\|ref\|YP_473948.1\| methionine-S-sulfoxide reductase [Synechococcus sp. JA-3-3Ab], gi\|86553...	271.0	[0..1]	[157..50]
gi\|84668247, gi\|... - gi\|84683504\|ref\|ZP_01011407.1\| Peptide methionine sulfoxide reductase [Rhodobacterales bacterium HTC...	269.0	[0..1]	[157..45]
gi\|84509700, gi\|... - gi\|84516664\|ref\|ZP_01004023.1\| Peptide methionine sulfoxide reductase [Loktanella vestfoldensis SKA5...	268.0	[0..1]	[157..46]
gi\|186684368, gi... - gi\|23126307\|ref\|ZP_00108208.1\| COG0225: Peptide methionine sulfoxide reductase [Nostoc punctiforme P...	268.0	[0..1]	[157..47]
gi\|115374225, gi... - gi\|115374225\|ref\|ZP_01461511.1\| methionine-S-sulfoxide reductase [Stigmatella aurantiaca DW4/3-1], g...	268.0	[0..2]	[157..23]
gi\|153825797, gi... - gi\|153825797\|ref\|ZP_01978464.1\| peptide methionine sulfoxide reductase [Vibrio cholerae MZO-2], gi\|1... MSRA_VIBC3 - Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Clas... gi\|254851090, gi... - gi\|75830520\|ref\|ZP_00759796.1\| COG0225: Peptide methionine sulfoxide reductase [Vibrio cholerae MO10... gi\|121547863, gi... - gi\|121587893\|ref\|ZP_01677649.1\| peptide methionine sulfoxide reductase [Vibrio cholerae 2740-80], gi... gi\|124114849, gi... - gi\|153215204\|ref\|ZP_01949885.1\| peptide methionine sulfoxide reductase [Vibrio cholerae 1587], gi\|12... gi\|124119235, gi... - gi\|153222014\|ref\|ZP_01952841.1\| peptide methionine sulfoxide reductase [Vibrio cholerae MAK 757], gi... gi\|153822953, gi... - gi\|229509678\|ref\|ZP_04399159.1\| peptide methionine sulfoxide reductase MsrA [Vibrio cholerae B33], g... MSRA_VIBCH - Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El T... MSRA_VIBCH - Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae GN=msrA PE=3 SV=1 MSRA_VIBCM - Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae serotype O1 (strain M66-2) GN=msrA PE... gi\|229507397, gi... - gi\|229507397\|ref\|ZP_04396902.1\| peptide methionine sulfoxide reductase MsrA [Vibrio cholerae BX 3302... gi\|229345866, gi... - gi\|229516803\|ref\|ZP_04406249.1\| peptide methionine sulfoxide reductase MsrA [Vibrio cholerae RC9], g... gi\|229369559, gi... - gi\|229606904\|ref\|YP_002877552.1\| peptide methionine sulfoxide reductase MsrA [Vibrio cholerae MJ-123...	267.0	[0..2]	[157..43]
MSRA_METTH - Peptide methionine sulfoxide reductase MsrA OS=Methanothermobacter thermautotrophicus (strain ATCC 2... gi\|7446679 - gi\|7446679\|pir\|\|F69170 peptide methionine sulfoxide reductase - Methanobacterium thermoautotrophicum...	267.0	[0..2]	[157..8]
gi\|88939647, gi\|... - gi\|88939647\|ref\|ZP_01145094.1\| peptide methionine sulfoxide reductase [Acidiphilium cryptum JF-5], g...	267.0	[0..2]	[157..54]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALATFGAGC FWGVEYFFRQ VNGVTNATCG YMGGNNEVTT YEEVKKGKTG HAEVVQVEFD  60
   61 PTIVSYDELL EVFWKNHNPT TLNMQGGDIG TQYRSTIFFH DREQKAAAEA SKLAFARSGR 120
  121 WGLRHIVTEI VPLQQFHVAE EYHQNYIDKN NLPSCHLEY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.522879
Match:	2gt3A
Description:	No description for 2gt3A was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	7.33214277590189	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	7.05871760837663	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	4.45221508174489	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.21670366786992	bayes_pls_golite062009
protein binding	0.0950083680136139	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: