YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348302, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	550 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348302, gi|....

Description	E-value	Query Range	Subject Range
gi\|194536798, gi... - gi\|75818588\|ref\|ZP_00748731.1\| COG0033: Phosphoglucomutase [Vibrio cholerae V51], gi\|254226099\|ref\|Z...	485.0	[0..1]	[549..1]
gi\|63256846, gi\|... - gi\|66046139\|ref\|YP_235980.1\| phosphoglucomutase [Pseudomonas syringae pv. syringae B728a], gi\|632568...	484.0	[0..1]	[549..1]
tr\|Q880W5\|Q880W5... - Phosphoglucomutase, alpha-D-glucose phosphate-specific OS=Pseudomonas syringae pv. tomato (strain DC... gi\|28853457, gi\|... - gi\|28870211\|ref\|NP_792830.1\| phosphoglucomutase [Pseudomonas syringae pv. tomato str. DC3000], gi\|28...	484.0	[0..1]	[549..1]
gi\|28805825, gi\|... - gi\|28897613\|ref\|NP_797218.1\| phosphoglucomutase [Vibrio parahaemolyticus RIMD 2210633], gi\|28805825\|... gi\|28805825 - gi\|28805825\|dbj\|BAC59102.1\| phosphoglucomutase [Vibrio parahaemolyticus RIMD 2210633] gi\|149748012, gi... - gi\|153838594\|ref\|ZP_01991261.1\| phosphoglucomutase, alpha-D-glucose phosphate-specific [Vibrio parah...	482.0	[0..1]	[550..1]
gi\|254229713, gi... - gi\|75854804\|ref\|ZP_00762477.1\| COG0033: Phosphoglucomutase [Vibrio sp. Ex25], gi\|254229713\|ref\|ZP_04...	482.0	[0..1]	[550..4]
gi\|254223297, gi... - gi\|75822485\|ref\|ZP_00752102.1\| COG0033: Phosphoglucomutase [Vibrio cholerae RC385], gi\|254223297\|ref... tr\|D7HAE6\|D7HAE6... - Phosphoglucomutase OS=Vibrio cholerae RC385 GN=VCRC385_01412 PE=3 SV=1	482.0	[0..1]	[549..1]
gi\|146316123, gi... - gi\|75827402\|ref\|ZP_00756837.1\| COG0033: Phosphoglucomutase [Vibrio cholerae O395], gi\|227118542\|ref\|...	482.0	[0..1]	[549..1]
gi\|153222208, gi... - gi\|153222208\|ref\|ZP_01952987.1\| phosphoglucomutase [Vibrio cholerae MAK 757], gi\|124119068\|gb\|EAY378... gi\|121548852, gi... - gi\|121586916\|ref\|ZP_01676696.1\| phosphoglucomutase [Vibrio cholerae 2740-80], gi\|121548852\|gb\|EAX588... gi\|153821700, gi... - gi\|229511947\|ref\|ZP_04401426.1\| phosphoglucomutase [Vibrio cholerae B33], gi\|229351912\|gb\|EEO16853.1... gi\|229507816, gi... - gi\|229507816\|ref\|ZP_04397321.1\| phosphoglucomutase [Vibrio cholerae BX 330286], gi\|229355321\|gb\|EEO2... gi\|126511059, gi... - gi\|153818369\|ref\|ZP_01971036.1\| phosphoglucomutase [Vibrio cholerae NCTC 8457], gi\|126511059\|gb\|EAZ7... gi\|229519083, gi... - gi\|229519083\|ref\|ZP_04408526.1\| phosphoglucomutase [Vibrio cholerae RC9], gi\|229343772\|gb\|EEO08747.1... gi\|227010109, gi... - gi\|227082221\|ref\|YP_002810772.1\| phosphoglucomutase [Vibrio cholerae M66-2], gi\|227010109\|gb\|ACP0632... gi\|229370016, gi... - gi\|229607361\|ref\|YP_002878009.1\| phosphoglucomutase [Vibrio cholerae MJ-1236], gi\|229370016\|gb\|ACQ60... gi\|254849182, gi... - gi\|254849182\|ref\|ZP_05238532.1\| phosphoglucomutase [Vibrio cholerae MO10], gi\|254844887\|gb\|EET23301.... gi\|15642095, gi\|... - gi\|9656644\|gb\|AAF95241.1\| phosphoglucomutase [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1564... gi\|11355807 - pir\|\|E82119 phosphoglucomutase VC2095 [imported] - Vibrio cholerae (strain N16961 serogroup O1)	482.0	[0..1]	[549..1]
gi\|26990290, gi\|... - gi\|26990290\|ref\|NP_745715.1\| phosphoglucomutase [Pseudomonas putida KT2440], gi\|24985242\|gb\|AAN69179...	480.0	[0..1]	[549..1]
gi\|91228420, gi\|... - gi\|91228420\|ref\|ZP_01262345.1\| phosphoglucomutase [Vibrio alginolyticus 12G01], gi\|91188004\|gb\|EAS74...	479.0	[0..1]	[550..1]

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Predicted Domain #1

Region A:
Residues: [1-550]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIHQRAGQI ASQMDLVNIP KLMSHYYSIK PNMDAAEQRV TFGTSGHRGT AFQGSFNQDH  60
   61 IWAITQAVVD YRQSVNIEGP LFLGIDTHAL SYAAYVSAIE VLAANKVTVY IQQNDGFTPT 120
  121 PVVSHAIICA NHAAAQNGAL LSDGLIITPS HNPPQDGGIK YNPPHGGPAE GNITAWIESR 180
  181 ANDYLRAALK GVNKLAYADA LASGYVHAID LITPYVADLE NVVDMHAIAK ANLKLGVDPL 240
  241 GGSGIHYWAP IAKHYGIDIT LVNDKVDPSF SFMSLDKDGK IRMDCSSPYA MAGLLAHKES 300
  301 FDLCVGNDPD YDRHGIVCPG TGLMDPNHYL AVAIDYLLTH RPEWSDSLAI GKTLVSSALI 360
  361 DKICVFHGKK LLEVPVGFKW FVDGLAEATI AFGGEESAGA AFLRRDGTTW CTDKDGFILV 420
  421 LLAAEMLAVT GKTPGQRHQE LVAQFGQSFY KRIDSPISLE NKAKFAKLNA DTLNATMLAG 480
  481 EKIEAVLTHA PGNNASIGGI KVTTTNGWFA ARPSGTEALF KIYGESFISE QHLAEIIKDA 540
  541 QALIDKALSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	133.0
Match:	2fuvA
Description:	Phosphoglucomutase from Salmonella typhimurium.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits