YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348264, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348264, gi|....

Description	E-value	Query Range	Subject Range
gi\|33577088, gi\|... - gi\|33602646\|ref\|NP_890206.1\| transcription regulator AsnC [Bordetella bronchiseptica RB50], gi\|33577...	168.0	[0..3]	[162..18]
gi\|120554653, gi... - gi\|77952851\|ref\|ZP_00817263.1\| regulatory proteins, AsnC/Lrp [Marinobacter aquaeolei VT8], gi\|778681...	168.0	[0..4]	[164..3]
gi\|33574172 - gi\|33574172\|emb\|CAE38504.1\| AsnC-family transcriptional regulator [Bordetella parapertussis] gi\|33597744 - gi\|33597744\|ref\|NP_885387.1\| transcription regulator AsnC [Bordetella parapertussis 12822]	167.0	[0..3]	[162..1]
gi\|33571902, gi\|... - gi\|33592257\|ref\|NP_879901.1\| transcription regulator AsnC [Bordetella pertussis Tohama I], gi\|335719...	166.0	[0..7]	[162..1]
gi\|70733484, gi\|... - gi\|70733484\|ref\|YP_263259.1\| AsnC family transcriptional regulator [Pseudomonas fluorescens Pf-5], g...	166.0	[0..7]	[165..1]
gi\|2120006, gi\|4... - gi\|407916\|gb\|AAA75467.1\| Lrp, pir\|\|S59993 transcription regulator lrp, leucine-responsive - Salmonel... gi\|407916\|gb\|AAA... - Lrp	165.0	[0..1]	[161..1]
gi\|118017743, gi... - gi\|157369925\|ref\|YP_001477914.1\| leucine-responsive transcriptional regulator [Serratia proteamacula... tr\|U1U9Z1\|U1U9Z1... - Leucine-binding transcriptional regulator OS=Serratia marcescens WW4 GN=lrp PE=4 SV=1, Transcription... gi\|30179433, gi\|... - gi\|31195993\|ref\|XP_306944.1\| ENSANGP00000000462 [Anopheles gambiae str. PEST], gi\|30179433\|gb\|EAA027... tr\|G0B3U3\|G0B3U3... - Transcriptional regulator, AsnC family OS=Serratia plymuthica (strain AS9) GN=SerAS9_1663 PE=4 SV=1 tr\|D4E8F1\|D4E8F1... - Leucine responsive regulatory protein OS=Serratia odorifera DSM 4582 GN=lrp PE=4 SV=1 tr\|I3AI29\|I3AI29... - AsnC family transcriptional regulator OS=Serratia plymuthica S13 GN=M621_08640 PE=4 SV=1, Leucine-re... tr\|G0BZH6\|G0BZH6... - Transcriptional regulator, AsnC family OS=Serratia sp. AS13 GN=SerAS13_1664 PE=4 SV=1 tr\|S5EFS9\|S5EFS9... - AsnC family transcriptional regulator OS=Serratia liquefaciens ATCC 27592 GN=M495_07965 PE=4 SV=1 tr\|G0BKN9\|G0BKN9... - Transcriptional regulator, AsnC family OS=Serratia sp. AS12 GN=SerAS12_1663 PE=4 SV=1	165.0	[0..1]	[161..1]
gi\|110641089, gi... - gi\|110641089\|ref\|YP_668819.1\| leucine-responsive transcriptional regulator [Escherichia coli 536], g... gi\|124501636, gi... - gi\|124526942\|ref\|ZP_01698824.1\| transcriptional regulator, AsnC family [Escherichia coli B], gi\|1245... gi\|227838896, gi... - gi\|227884144\|ref\|ZP_04001949.1\| Lrp family transcriptional regulator [Escherichia coli 83972], gi\|22...	165.0	[0..1]	[161..18]
LRP_SALTY - Leucine-responsive regulatory protein OS=Salmonella typhimurium GN=lrp PE=3 SV=2 lcl\|NC_016856.1_... - [gene=lrp] [protein=leucine-responsive transcriptional regulator] [protein_id=YP_005236673.1] [locat... gi\|238893950, gi... - gi\|238893950\|ref\|YP_002918684.1\| leucine-responsive regulatory protein [Klebsiella pneumoniae NTUH-K... gi\|238913434 - gi\|238913434\|ref\|ZP_04657271.1\| leucine-responsive transcriptional regulator [Salmonella enterica su... gi\|62127116, gi\|... - gi\|62179483\|ref\|YP_215900.1\| leucine-responsive transcriptional regulator [Salmonella enterica subsp... LRP_SALTY - Leucine-responsive regulatory protein OS=Salmonella typhimurium GN=lrp PE=3 SV=2 LRP_SALTY - Leucine-responsive regulatory protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720... gi\|56413989, gi\|... - gi\|56413989\|ref\|YP_151064.1\| leucine-responsive transcriptional regulator [Salmonella enterica subsp... LRP_KLEAE - Leucine-responsive regulatory protein OS=Klebsiella aerogenes GN=lrp PE=3 SV=2 gi\|283784711\|ref... - leucine-responsive regulatory protein [Citrobacter rodentium ICC168] gi\|168236868, gi... - gi\|197290107\|gb\|EDY29464.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|168230852, gi... - gi\|205334879\|gb\|EDZ21643.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|167994700, gi... - gi\|205327470\|gb\|EDZ14234.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|205324513, gi... - gi\|205324513\|gb\|EDZ12352.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|205340733, gi... - gi\|205340733\|gb\|EDZ27497.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|195630989, gi... - gi\|195630989\|gb\|EDX49575.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|205347798, gi... - gi\|205347798\|gb\|EDZ34429.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|168240809, gi... - gi\|205340193\|gb\|EDZ26957.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|161614811, gi... - gi\|161614811\|ref\|YP_001588776.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|160865262, gi... - gi\|161503915\|ref\|YP_001571027.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|157146423, gi... - gi\|157146423\|ref\|YP_001453742.1\| leucine-responsive transcriptional regulator [Citrobacter koseri AT... gi\|150954327, gi... - gi\|152969478\|ref\|YP_001334587.1\| leucine-responsive transcriptional regulator [Klebsiella pneumoniae... gi\|206581091, gi... - gi\|206581091\|ref\|YP_002239458.1\| leucine-responsive regulatory protein [Klebsiella pneumoniae 342], ... gi\|205271948, gi... - gi\|205352167\|ref\|YP_002225968.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|204929920, gi... - gi\|204929920\|ref\|ZP_03220941.1\| leucine responsive regulatory protein [Salmonella enterica subsp. en... gi\|199601935, gi... - gi\|200389490\|ref\|ZP_03216101.1\| leucine responsive regulatory protein [Salmonella enterica subsp. en... gi\|224467296, gi... - gi\|224582769\|ref\|YP_002636567.1\| leucine-responsive regulatory protein [Salmonella enterica subsp. e... gi\|206708154, gi... - gi\|207856351\|ref\|YP_002243002.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|194734832, gi... - gi\|194734832\|ref\|YP_002114011.1\| leucine responsive regulatory protein [Salmonella enterica subsp. e... gi\|194469844, gi... - gi\|194469844\|ref\|ZP_03075828.1\| leucine responsive regulatory protein [Salmonella enterica subsp. en... gi\|194407253, gi... - gi\|194448949\|ref\|YP_002044952.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|194443719, gi... - gi\|194443719\|ref\|YP_002040158.1\| leucine responsive regulatory protein [Salmonella enterica subsp. e... gi\|198242823, gi... - gi\|198242823\|ref\|YP_002214883.1\| leucine responsive regulatory protein [Salmonella enterica subsp. e... gi\|197362912, gi... - gi\|197362912\|ref\|YP_002142549.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|197261953, gi... - gi\|197261953\|ref\|ZP_03162027.1\| leucine responsive regulatory protein [Salmonella enterica subsp. en... gi\|197251292, gi... - gi\|197251292\|ref\|YP_002145877.1\| leucine responsive regulatory protein [Salmonella enterica subsp. e...	165.0	[0..1]	[161..1]
gi\|29142397, gi\|... - gi\|29142397\|ref\|NP_805739.1\| leucine-responsive transcriptional regulator [Salmonella enterica subsp... gi\|16759830 - gi\|16759830\|ref\|NP_455447.1\| leucine-responsive transcriptional regulator [Salmonella enterica subsp... gi\|25301193, gi\|... - gi\|25301193\|pir\|\|AE0611 leucine-responsive regulatory protein STY0957 [imported] - Salmonella enteri... gi\|214003465 - gi\|214003465\|ref\|ZP_03414200.1\| leucine-responsive transcriptional regulator [Salmonella enterica su... gi\|213419077 - gi\|213419077\|ref\|ZP_03352143.1\| leucine-responsive transcriptional regulator [Salmonella enterica su... gi\|213428594 - gi\|213428594\|ref\|ZP_03361344.1\| leucine-responsive transcriptional regulator [Salmonella enterica su... gi\|213649840 - gi\|213649840\|ref\|ZP_03379893.1\| leucine-responsive transcriptional regulator [Salmonella enterica su... gi\|213977749 - gi\|213977749\|ref\|ZP_03405008.1\| leucine-responsive transcriptional regulator [Salmonella enterica su... gi\|213023687 - gi\|213023687\|ref\|ZP_03338134.1\| leucine-responsive transcriptional regulator [Salmonella enterica su... gi\|213052416 - gi\|213052416\|ref\|ZP_03345294.1\| leucine-responsive transcriptional regulator [Salmonella enterica su...	164.0	[0..1]	[161..1]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYNKKSPVK DLDRIDRNIL NELQIDGRIS NVELSKRVGL SPTPCLERVK RLEKQGYING  60
   61 YTALVNPHFL GASLLVFVEI TLSRDTPEVF DKFNRAVQLL DDIQECHLVS GDFDYLLKTR 120
  121 VSDMSAYRRL LGETLLKLPS VSDTRTYVVM EEVKHTSRVA INHLLSDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.221849
Match:	2gqqA
Description:	No description for 2gqqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits