YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|24373845, gi|...
Organism: Shewanella oneidensis MR-1
Length: 400 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373845, gi|....

Description E-value Query
Range
Subject
Range
gi|24376341, gi|... - gi|24376341|ref|NP_720449.1| ISSod4, transposase [Shewanella oneidensis MR-1], gi|24345246|gb|AAN530...
SOA0130 - ISSod4-50 transposase
319.0 [0..1] [400..1]
gi|148265724, gi... - gi|88938076|ref|ZP_01143588.1| transposase, mutator family [Geobacter uraniumreducens Rf4], gi|88937...
316.0 [0..1] [397..1]
gi|47174902 - gi|47174902|gb|AAT12436.1| TnpA [Salmonella enterica]
314.0 [0..8] [397..11]
gi|75234766, gi|... - gi|75234766|ref|ZP_00719076.1| COG3328: Transposase and inactivated derivatives [Escherichia coli E1...
313.0 [0..8] [397..11]
gi|10567527 - gi|10567527|gb|AAG18473.1|AF143819_2 transposase-like protein; TnpA [Escherichia coli]
313.0 [0..8] [397..11]
gi|90309326, gi|... - gi|90309326|gb|ABD93710.1| TnpA [Edwardsiella ictaluri], gi|162404915|gb|ABX88888.1| transposase [Ed...
312.0 [0..8] [397..22]

Back

Predicted Domain #1
Region A:
Residues: [1-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQPFNFEQA LKDLQSGKSL TGKDSILGPL IKQLTEAALQ AELEQHLAHD PQANRKNGKT  60
   61 PKTIKHPSGN FELDAPRDRN GTFEPQLIKK NQTTLTDEIE RKVLSMFSIG MSYRDINQHV 120
  121 EDMYGLNVSN ATVSAITDKL IPELKAWQQR PLDSHYPIVW LDAIHYKVKE DGRYVSKAVY 180
  181 TLLALNMKGK KEILGLHLSE NEGANYWLSV LTDLNNRGVK DILIACV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [228-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGLTGFPEAI ASIFPHTETQ LCVIHQIRNS MKYVASKNQK AFMADLKPVY RAVSKEAAEM  60
   61 ALDELEAKWG DAYPLVINSW RRKWHNLSHY FKYPEHIRKV IYTTNAVEAV HRQFRKLTKT 120
  121 KGAFPNENSL LKLLYAGILN ASDKWTMPIH NWSLCLSQLA IYFEGRLDSV LEI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle