YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373815, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373815, gi|....

Description	E-value	Query Range	Subject Range
gi\|78688377, gi\|... - gi\|78688377\|ref\|ZP_00853074.1\| Serine O-acetyltransferase [Shewanella sp. ANA-3], gi\|78503881\|gb\|EAP... gi\|114047316, gi... - gi\|114047316\|ref\|YP_737866.1\| serine O-acetyltransferase [Shewanella sp. MR-7], gi\|113888758\|gb\|ABI4...	237.0	[0..1]	[273..1]
gi\|113884759, gi... - gi\|82496761\|ref\|ZP_00882325.1\| Serine O-acetyltransferase [Shewanella sp. MR-4], gi\|82405170\|gb\|EAP4...	237.0	[0..1]	[273..1]
gi\|125997817, gi... - gi\|68543636\|ref\|ZP_00583334.1\| Serine O-acetyltransferase [Shewanella baltica OS155], gi\|68518680\|gb...	232.0	[0..1]	[273..1]
gi\|149118009, gi... - gi\|217973135\|ref\|YP_002357886.1\| serine O-acetyltransferase [Shewanella baltica OS223], gi\|217498270... gi\|151365526, gi... - gi\|153000908\|ref\|YP_001366589.1\| serine O-acetyltransferase [Shewanella baltica OS185], gi\|151365526... gi\|113951178, gi... - gi\|160875616\|ref\|YP_001554932.1\| serine O-acetyltransferase [Shewanella baltica OS195], gi\|160861138...	232.0	[0..1]	[273..1]
gi\|124547821, gi... - gi\|124547821\|ref\|ZP_01706646.1\| serine O-acetyltransferase [Shewanella putrefaciens 200], gi\|1245089... gi\|120598675, gi... - gi\|82743796\|ref\|ZP_00906419.1\| Serine O-acetyltransferase [Shewanella sp. W3-18-1], gi\|82718834\|gb\|E... gi\|77815060, gi\|... - gi\|77815060\|ref\|ZP_00814303.1\| Serine O-acetyltransferase [Shewanella putrefaciens CN-32], gi\|778099...	230.0	[0..1]	[273..1]
gi\|46164502, gi\|... - gi\|46164502\|ref\|ZP_00205097.1\| COG1045: Serine acetyltransferase [Pseudomonas aeruginosa UCBPP-PA14]... gi\|218889900, gi... - gi\|218889900\|ref\|YP_002438764.1\| O-acetylserine synthase [Pseudomonas aeruginosa LESB58], gi\|2187701...	229.0	[0..3]	[258..1]
gi\|11350683 - pir\|\|A83169 O-acetylserine synthase PA3816 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|107103336 - gi\|107103336\|ref\|ZP_01367254.1\| hypothetical protein PaerPA_01004405 [Pseudomonas aeruginosa PACS2] gi\|15599011, gi\|... - gi\|9949990\|gb\|AAG07203.1\|AE004799_9 O-acetylserine synthase [Pseudomonas aeruginosa PAO1], gi\|155990... gi\|194553492, gi... - gi\|84325545\|ref\|ZP_00973580.1\| COG1045: Serine acetyltransferase [Pseudomonas aeruginosa 2192], gi\|2...	228.0	[0..3]	[258..1]
gi\|152986827, gi... - gi\|94412418\|ref\|ZP_01292347.1\| hypothetical protein PaerP_01005783 [Pseudomonas aeruginosa PA7], gi\|...	227.0	[0..3]	[257..1]
gi\|119766928, gi... - gi\|68547394\|ref\|ZP_00586931.1\| Serine O-acetyltransferase [Shewanella amazonensis SB2B], gi\|68514912...	227.0	[0..1]	[273..1]
gi\|254236720, gi... - gi\|84319380\|ref\|ZP_00967777.1\| COG1045: Serine acetyltransferase [Pseudomonas aeruginosa C3719], gi\|...	227.0	[0..3]	[258..1]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVIARLKED IESIYHRDPA ARSAFEILVN YPGMHAIWLH RISHKLWKRD WRLMARCLST  60
   61 FSRWLTGVEI HPGATIGNRF FIDHGMGVVI GETAEIGDDC TLYHGVTLGG TTWQAGKRHP 120
  121 TLGNNVVVGA GAKILGPITM HDGARVGSNS VVVKDVPKDT TVVGIPGRVV ATPSPQSKEK 180
  181 SERRSAMAKK Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.09691
Match:	1t3dA
Description:	Crystal structure of Serine Acetyltransferase from E.coli at 2.2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
O-acyltransferase activity	2.96382736707397	bayes_pls_golite062009
catalytic activity	2.59855937987599	bayes_pls_golite062009
serine O-acetyltransferase activity	2.10697394347266	bayes_pls_golite062009
serine O-acyltransferase activity	2.10697394347266	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	2.00406253837813	bayes_pls_golite062009
acyltransferase activity	1.97801068671318	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.94103020303346	bayes_pls_golite062009
O-acetyltransferase activity	1.93041803216972	bayes_pls_golite062009
transferase activity	1.3237300007392	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [192-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFDAYAVSPD NPDPVANAIG QMLDHMHLMD SKVQELCQAI QRLGGDVCTE RLPELNVGDF  60
   61 NDVEKAAADK RQSALDEFDP SI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: