YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373814, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373814, gi|....

Description	E-value	Query Range	Subject Range
gi\|114047315, gi... - gi\|78692444\|ref\|ZP_00856967.1\| RNA methyltransferase TrmH, group 1 [Shewanella sp. MR-7], gi\|7850815...	239.0	[0..1]	[241..1]
gi\|78688378, gi\|... - gi\|78688378\|ref\|ZP_00853075.1\| RNA methyltransferase TrmH, group 1 [Shewanella sp. ANA-3], gi\|785038...	239.0	[0..1]	[241..1]
gi\|113970074, gi... - gi\|82496762\|ref\|ZP_00882326.1\| RNA methyltransferase TrmH, group 1 [Shewanella sp. MR-4], gi\|8240517...	238.0	[0..1]	[241..1]
gi\|78369010, gi\|... - gi\|78369010\|ref\|ZP_00839189.1\| RNA methyltransferase TrmH, group 1 [Shewanella sp. PV-4], gi\|7835897...	236.0	[0..1]	[241..17]
gi\|69163916, gi\|... - gi\|69952832\|ref\|ZP_00640180.1\| RNA methyltransferase TrmH, group 1 [Shewanella frigidimarina NCIMB 4...	235.0	[0..1]	[239..1]
gi\|82743795, gi\|... - gi\|82743795\|ref\|ZP_00906418.1\| RNA methyltransferase TrmH, group 1 [Shewanella sp. W3-18-1], gi\|8271... gi\|77815059, gi\|... - gi\|77815059\|ref\|ZP_00814302.1\| RNA methyltransferase TrmH, group 1 [Shewanella putrefaciens CN-32], ... gi\|124508942, gi... - gi\|124547820\|ref\|ZP_01706645.1\| RNA methyltransferase, TrmH family, group 1 [Shewanella putrefaciens...	233.0	[0..1]	[241..1]
gi\|119766927, gi... - gi\|68547393\|ref\|ZP_00586930.1\| RNA methyltransferase TrmH, group 1 [Shewanella amazonensis SB2B], gi...	230.0	[0..1]	[240..1]
gi\|68543637, gi\|... - gi\|68543637\|ref\|ZP_00583335.1\| RNA methyltransferase TrmH, group 1 [Shewanella baltica OS155], gi\|68...	230.0	[0..1]	[241..1]
gi\|68346591, gi\|... - gi\|70732292\|ref\|YP_262048.1\| RNA methyltransferase [Pseudomonas fluorescens Pf-5], gi\|68346591\|gb\|AA...	229.0	[0..1]	[239..1]
gi\|217973134, gi... - gi\|217973134\|ref\|YP_002357885.1\| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica OS2... gi\|151365527, gi... - gi\|153000909\|ref\|YP_001366590.1\| RNA methyltransferase [Shewanella baltica OS185], gi\|151365527\|gb\|A... gi\|113951179, gi... - gi\|160875617\|ref\|YP_001554933.1\| RNA methyltransferase [Shewanella baltica OS195], gi\|160861139\|gb\|A...	229.0	[0..1]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSNIRVILV GTSHPGNIGS TARAMKTMGL STLYLAEPRC EVDGQSIALA AGASDILKHL  60
   61 VKVDSLQEAI ADCSLVIATS ARSRTLDWPM LEPREAGQKL VTEGITGPVA IVFGRENHGL 120
  121 TNEELQQCTY HVAIPANPEY SSLNLAQAVQ IICYETRVAH LAQMEAPQAV EEYPLSADLE 180
  181 RFFVHLESTL SSTGFIIKNH PGQVMTKLRR MFSRARIESQ EMNILRGILT SIDKVVGNKQ 240
  241 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	1zjrA
Description:	Crystal Structure of A. aeolicus TrmH/SpoU tRNA modifying enzyme
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits