YRC Public Data Repository - Protein Structure Prediction

Protein:	ACYP_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACYP_SHEON.

Description	E-value	Query Range	Subject Range
gi\|57641932, gi\|... - gi\|57641932\|ref\|YP_184410.1\| hydrogenase maturation protein HypF [Thermococcus kodakarensis KOD1], g...	124.0	[0..1]	[88..1]
gi\|18892549, gi\|... - gi\|18976931\|ref\|NP_578288.1\| hydrogenase expression/formation regulatory protein [Pyrococcus furiosu...	122.0	[0..1]	[88..7]
gi\|114552925, gi... - gi\|114776839\|ref\|ZP_01451882.1\| Acylphosphatase [Mariprofundus ferrooxydans PV-1], gi\|114552925\|gb\|E...	119.0	[0..1]	[88..1]
gi\|117623178, gi... - gi\|117623178\|ref\|YP_852091.1\| putative acylphosphatase [Escherichia coli APEC O1], gi\|115512302\|gb\|A...	119.0	[0..1]	[89..72]
ACYP_THEMA - Acylphosphatase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=acyP PE=... ACYP_THEMA - Acylphosphatase OS=Thermotoga maritima GN=acyP PE=3 SV=1 gi\|170176519, gi... - gi\|170289016\|ref\|YP_001739254.1\| acylphosphatase [Thermotoga sp. RQ2], gi\|170176519\|gb\|ACB09571.1\| a... ACYP_THEP1 - Acylphosphatase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=acyP PE=3 SV=1	118.0	[0..1]	[89..1]
gi\|77955270, gi\|... - gi\|77955270\|ref\|ZP_00819643.1\| similar to Acylphosphatases [Marinobacter aquaeolei VT8], gi\|77865874...	118.0	[0..3]	[87..25]
gi\|7449700, gi\|5... - pir\|\|D75031 hydrogenase expression/formation regulatory protein (hypf) PAB1560 - Pyrococcus abyssi (... gi\|5458658, gi\|1... - gi\|5458658\|emb\|CAB50145.1\| hypF hydrogenase expression/formation regulatory protein [Pyrococcus abys...	118.0	[0..1]	[88..1]
gi\|147920435, gi... - gi\|147920435\|ref\|YP_685774.1\| putative hydrogenase expression/formation protein (maturation factor) ...	117.0	[0..1]	[88..1]
gi\|91071639, gi\|... - gi\|91210065\|ref\|YP_540051.1\| putative acylphosphatase [Escherichia coli UTI89], gi\|91071639\|gb\|ABE06...	117.0	[0..1]	[89..41]
ACYP_SALTI - Acylphosphatase OS=Salmonella typhi GN=yccX PE=3 SV=1 gi\|213850116 - gi\|213850116\|ref\|ZP_03381014.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serova... gi\|213975459 - gi\|213975459\|ref\|ZP_03402718.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serova... gi\|213999259 - gi\|213999259\|ref\|ZP_03409994.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serova... gi\|224468937, gi... - gi\|224584410\|ref\|YP_002638208.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serov... ACYP_SALTI - Acylphosphatase OS=Salmonella typhi GN=yccX PE=3 SV=1 ACYP_SALTY - Acylphosphatase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yccX PE=3 SV=1 gi\|238911093 - gi\|238911093\|ref\|ZP_04654930.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serova... gi\|29142265, gi\|... - gi\|29142265\|ref\|NP_805607.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serovar T... gi\|16759964 - gi\|16759964\|ref\|NP_455581.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serovar T... gi\|161364085, gi... - gi\|161614721\|ref\|YP_001588686.1\| hypothetical protein SPAB_02473 [Salmonella enterica subsp. enteric... gi\|205327303, gi... - gi\|205327303\|gb\|EDZ14067.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:... gi\|168237138, gi... - gi\|197289809\|gb\|EDY29170.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Schwarzengr... gi\|205337238, gi... - gi\|205337238\|gb\|EDZ24002.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Heidelberg ... gi\|62127238, gi\|... - gi\|62179605\|ref\|YP_216022.1\| putative phosphohydrolase [Salmonella enterica subsp. enterica serovar ... gi\|213418867 - gi\|213418867\|ref\|ZP_03351933.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serova... gi\|213427327 - gi\|213427327\|ref\|ZP_03360077.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serova... gi\|213621836 - gi\|213621836\|ref\|ZP_03374619.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serova... gi\|213650511 - gi\|213650511\|ref\|ZP_03380564.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serova... gi\|199602148, gi... - gi\|200389703\|ref\|ZP_03216314.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Virchow... gi\|204930707, gi... - gi\|204930707\|ref\|ZP_03221580.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Javiana... gi\|205272019, gi... - gi\|205352238\|ref\|YP_002226039.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serov... gi\|206708231, gi... - gi\|207856428\|ref\|YP_002243079.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serov... gi\|194448434, gi... - gi\|194448434\|ref\|YP_002045084.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Heidel... ACYP_SALTY - Acylphosphatase OS=Salmonella typhimurium GN=yccX PE=3 SV=1 gi\|194734524, gi... - gi\|194734524\|ref\|YP_002114082.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Schwar... lcl\|NC_016856.1_... - [gene=yccX] [protein=putative phosphohydrolase] [protein_id=YP_005236817.1] [location=1131918..11321... gi\|197263936, gi... - gi\|197263936\|ref\|ZP_03164010.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Saintpa... gi\|198245679, gi... - gi\|198245679\|ref\|YP_002215015.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Dublin... gi\|205347318, gi... - gi\|205347318\|gb\|EDZ33949.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Hadar str. ... gi\|168467525, gi... - gi\|195630035\|gb\|EDX48687.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Newport str... ACYP_SALTY - Acylphosphatase OS=Salmonella typhimurium GN=yccX PE=3 SV=1 gi\|205341757, gi... - gi\|205341757\|gb\|EDZ28521.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Weltevreden... gi\|194446649, gi... - gi\|194446649\|ref\|YP_002040285.1\| acylphosphatase [Salmonella enterica subsp. enterica serovar Newpor...	117.0	[0..7]	[89..9]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVLIKLTG KVQGVGCRRT TLAKARVLGV TGYVTNCVDG SVEVLAQGSH VAVDNLIAWC  60
   61 QAGVPCTVGL RVDVEEYQGD DIYLDFSIVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1y9oA
Description:	1H NMR Structure of Acylphosphatase from the hyperthermophile Sulfolobus Solfataricus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits