YRC Public Data Repository - Protein Structure Prediction

Protein:	NAGZ_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAGZ_SHEON.

Description	E-value	Query Range	Subject Range
gi\|20806741, gi\|... - gi\|33286394\|gb\|AAQ01678.1\| beta-glucosidase [Thermoanaerobacter tengcongensis], gi\|20806741\|ref\|NP_6... gi\|223490105, gi... - gi\|254478116\|ref\|ZP_05091499.1\| Glycosyl hydrolase family 3 N terminal domain protein [Carboxydibrac... gi\|20806741, gi\|... - gi\|20806741\|ref\|NP_621912.1\| Beta-glucosidase-related glycosidase [Thermoanaerobacter tengcongensis ...	351.0	[0..2]	[328..14]
NAGZ_SHESR - Beta-hexosaminidase OS=Shewanella sp. (strain MR-7) GN=nagZ PE=3 SV=1	327.0	[0..1]	[342..1]
NAGZ_PHOLL - Beta-hexosaminidase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT... NAGZ_PHOLL - Beta-hexosaminidase OS=Photorhabdus luminescens subsp. laumondii GN=nagZ PE=3 SV=1	326.0	[0..1]	[334..1]
NAGZ_SHESM - Beta-hexosaminidase OS=Shewanella sp. (strain MR-4) GN=nagZ PE=3 SV=1	325.0	[0..1]	[342..1]
gi\|77808972, gi\|... - gi\|77816056\|ref\|ZP_00815265.1\| Glycoside hydrolase, family 3, N-terminal [Shewanella putrefaciens CN...	323.0	[0..1]	[342..1]
NAGZ_SHESA - Beta-hexosaminidase OS=Shewanella sp. (strain ANA-3) GN=nagZ PE=3 SV=1	322.0	[0..1]	[342..1]
gi\|23097725, gi\|... - gi\|23097725\|ref\|NP_691191.1\| beta-hexosaminidase [Oceanobacillus iheyensis HTE831], gi\|22775949\|dbj\|...	320.0	[0..2]	[323..58]
NAGZ_PASMU - Beta-hexosaminidase OS=Pasteurella multocida (strain Pm70) GN=nagZ PE=3 SV=1 NAGZ_PASMU - Beta-hexosaminidase OS=Pasteurella multocida GN=nagZ PE=3 SV=1	319.0	[0..1]	[335..1]
gi\|120598654, gi... - gi\|82742003\|ref\|ZP_00904710.1\| beta-hexosaminidase [Shewanella sp. W3-18-1], gi\|82720661\|gb\|EAP55520...	318.0	[0..1]	[341..1]

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Predicted Domain #1

Region A:
Residues: [1-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLMLDLLS LDVSEAEAEM LRHPQVGGLI LFSRNFTSRE QLIALVQQIR QIRPEILIAV  60
   61 DHEGGRVQRF REGFTLIPAM GDILPAAKGD MALAKRWACE LGFLMAIELL ACDIDLSFAP 120
  121 VLDLNGISQV IGKRSFSANP DEVIALARSF IEGMAQAGMG AVGKHFPGHG SVAADSHIAQ 180
  181 PIDEREGEVI FNQDILPFKE LIFNGKLSGI MPAHVIYPKV DPNPAGFSSY WLKQILRKEL 240
  241 GFNGVIFSDD LGMKGASFAG DYVGRAKAAL DAGCDMILVC NDNPGVMTLL NGFVWPEAAP 300
  301 QHPASLLKPN MAQTALALEN SARWENAKQL AEQIQLAQQA KV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.30103
Match:	2oxnA
Description:	No description for 2oxnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits