YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348190, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348190, gi|....

Description	E-value	Query Range	Subject Range
gi\|48845866, gi\|... - gi\|78224248\|ref\|YP_385995.1\| DNA polymerase III, epsilon subunit [Geobacter metallireducens GS-15], ...	195.0	[0..12]	[211..5]
gi\|113884792, gi... - gi\|82496285\|ref\|ZP_00881854.1\| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4], gi\|8240564...	195.0	[0..1]	[211..18]
DPO3_BACSU - DNA polymerase III polC-type OS=Bacillus subtilis GN=polC PE=1 SV=2 gi\|221318783 - gi\|221318783\|ref\|ZP_03600077.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH64... gi\|221313860 - gi\|221313860\|ref\|ZP_03595665.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB... gi\|221323055 - gi\|221323055\|ref\|ZP_03604349.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] DPO3_BACSU - DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168) GN=polC PE=1 SV=2	193.0	[0..8]	[210..416]
gi\|113888789, gi... - gi\|78690552\|ref\|ZP_00855196.1\| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7], gi\|7851006...	192.0	[0..1]	[211..28]
DPO3_CLOTE - DNA polymerase III polC-type OS=Clostridium tetani GN=polC PE=3 SV=1 DPO3_CLOTE - DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) GN=polC PE=3 SV=1	192.0	[0..10]	[211..410]
gi\|78687487, gi\|... - gi\|78687487\|ref\|ZP_00852234.1\| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3], gi\|785047...	192.0	[0..1]	[211..18]
gi\|152976184, gi... - gi\|89203212\|ref\|ZP_01181903.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	191.0	[0..8]	[210..413]
DPO3_OCEIH - DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /... DPO3_OCEIH - DNA polymerase III polC-type OS=Oceanobacillus iheyensis GN=polC PE=3 SV=1	190.0	[0..3]	[210..404]
DPO3_CALS4 - DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242... DPO3_THETN - DNA polymerase III polC-type OS=Thermoanaerobacter tengcongensis GN=polC PE=3 SV=1	190.0	[0..12]	[211..387]
gi\|89098599, gi\|... - gi\|89098599\|ref\|ZP_01171481.1\| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911], gi\|8908...	190.0	[0..3]	[210..415]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKTPVYTPA NTLVVLDFET SGLSPNQGAR AIEIGAVLIE QGQITTRFSE LMNPGFRINA  60
   61 FIEDYTGISN QMLAHAAPCA EVMARFAEFI GKHHLVAHNA AFDQRFLDAE FAHIGHQYSG 120
  121 QFGCSLLLAR RLYPEAINHQ LATLVRHKQL PNNGTFHRAL ADAEMTGHLW LRMLADLKQD 180
  181 FAIVEPPFSL MQKVMSKSKA EVPKFLRQYA RA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2p1jA
Description:	No description for 2p1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits