YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373791, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373791, gi|....

Description	E-value	Query Range	Subject Range
gi\|20808237, gi\|... - gi\|20808237\|ref\|NP_623408.1\| phosphotransferase system, HPr-related proteins [Thermoanaerobacter ten... gi\|20808237 - gi\|20808237\|ref\|NP_623408.1\| Phosphotransferase system, HPr-related proteins [Thermoanaerobacter ten...	113.0	[0..1]	[83..1]
gi\|241885227, gi... - gi\|241902512\|ref\|ZP_04787246.1\| phosphocarrier, HPr family [Thermoanaerobacter brockii subsp. finni... gi\|76796564, gi\|... - gi\|76796564\|ref\|ZP_00778923.1\| Phosphoryl transfer system, HPr [Thermoanaerobacter ethanolicus ATCC ...	111.0	[0..1]	[83..1]
tr\|S5EX98\|S5EX98... - PTS sugar transporter OS=Serratia liquefaciens ATCC 27592 GN=M495_17760 PE=4 SV=1 gi\|118015420, gi... - gi\|157371685\|ref\|YP_001479674.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|21039016 - gi\|21039016\|dbj\|BAB92987.1\| HPr of PTS system [Serratia marcescens]	111.0	[0..1]	[84..1]
gi\|114804824, gi... - gi\|167039835\|ref\|YP_001662820.1\| phosphotransferase system, phosphocarrier protein HPr [Thermoanaero... gi\|242256248, gi... - gi\|242256248\|ref\|ZP_04801142.1\| phosphocarrier, HPr family [Thermoanaerobacter sp. X513], gi\|2422322...	110.0	[0..1]	[83..1]
gi\|227887462, gi... - gi\|227887462\|ref\|ZP_04005267.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... EG10788 - phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) / PTS system histidi... PTHP_SALTY - Phosphocarrier protein HPr OS=Salmonella typhimurium GN=ptsH PE=1 SV=1 gi\|56126939, gi\|... - gi\|56412682\|ref\|YP_149757.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|82777809, gi\|... - gi\|82777809\|ref\|YP_404158.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|188495975, gi... - gi\|75515758\|ref\|ZP_00737893.1\| COG1925: Phosphotransferase system, HPr-related proteins [Escherichia... gi\|74312951, gi\|... - gi\|74312951\|ref\|YP_311370.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|81246286, gi\|... - gi\|82544875\|ref\|YP_408822.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|62128632, gi\|... - gi\|62180999\|ref\|YP_217416.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|156933027, gi... - gi\|156933027\|ref\|YP_001436943.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|254794369, gi... - gi\|254794369\|ref\|YP_003079206.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|253974299, gi... - gi\|254162398\|ref\|YP_003045506.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|254289159, gi... - gi\|254289159\|ref\|YP_003054907.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|251785749, gi... - gi\|251785749\|ref\|YP_003000053.1\| hypothetical protein B21_02276 [Escherichia coli BL21], gi\|24237802... gi\|238912846 - gi\|238912846\|ref\|ZP_04656683.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... gi\|238862051, gi... - gi\|238901578\|ref\|YP_002927374.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|237704940, gi... - gi\|237704940\|ref\|ZP_04535421.1\| multiphosphoryl transfer protein [Escherichia sp. 3_2_53FAA], gi\|226... lcl\|NC_016856.1_... - [gene=ptsH] [protein=phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)... PTHP_SHIFL - Phosphocarrier protein HPr OS=Shigella flexneri GN=ptsH PE=3 SV=1 PTHP_SALTI - Phosphocarrier protein HPr OS=Salmonella typhi GN=ptsH PE=3 SV=1 PTHP_SALTY - Phosphocarrier protein HPr OS=Salmonella typhimurium GN=ptsH PE=1 SV=1 PTHP_SALTY - Phosphocarrier protein HPr OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ptsH P... gi\|24113760, gi\|... - gi\|24113760\|ref\|NP_708270.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... PTHP_ECOL6 - Phosphocarrier protein HPr OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ptsH PE... gi\|29140953, gi\|... - gi\|29140953\|ref\|NP_804295.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|30063809, gi\|... - gi\|30063809\|ref\|NP_837980.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... PTHP_ECO57 - Phosphocarrier protein HPr OS=Escherichia coli O157:H7 GN=ptsH PE=3 SV=1 EG10788 - phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) / PTS system histidi... gi\|16761351 - gi\|16761351\|ref\|NP_456968.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|12516791, gi\|... - gi\|15802948\|ref\|NP_288977.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... PTHP_ECOLI - Phosphocarrier protein HPr (Histidine-containing protein) - Escherichia coli gi\|283786052\|ref... - phosphocarrier protein HPr [Citrobacter rodentium ICC168] PTHP_ECOL6 - Phosphocarrier protein HPr OS=Escherichia coli O6 GN=ptsH PE=3 SV=1 gi\|213051553 - gi\|213051553\|ref\|ZP_03344431.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... gi\|213424291 - gi\|213424291\|ref\|ZP_03357123.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... PTHP_SALTI - Phosphocarrier protein HPr OS=Salmonella typhi GN=ptsH PE=3 SV=1 gi\|213584733 - gi\|213584733\|ref\|ZP_03366559.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... gi\|213622987 - gi\|213622987\|ref\|ZP_03375770.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... gi\|213646056 - gi\|213646056\|ref\|ZP_03376109.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... gi\|213855345 - gi\|213855345\|ref\|ZP_03383585.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... gi\|213975681 - gi\|213975681\|ref\|ZP_03402940.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... gi\|214003198 - gi\|214003198\|ref\|ZP_03413933.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS s... gi\|205273319, gi... - gi\|205353538\|ref\|YP_002227339.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|207857844, gi... - gi\|207857844\|ref\|YP_002244495.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|208728224, gi... - gi\|208808423\|ref\|ZP_03250760.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC4206], ... gi\|208813083, gi... - gi\|208813083\|ref\|ZP_03254412.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC4045], ... gi\|208739918, gi... - gi\|208819795\|ref\|ZP_03260115.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC4042], ... gi\|209398809, gi... - gi\|209398809\|ref\|YP_002271894.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC4115],... gi\|209909037, gi... - gi\|209909037\|ref\|ZP_03283521.1\| hypothetical protein ENTCAN_03327 [Enterobacter cancerogenus ATCC 35... gi\|209919897, gi... - gi\|209919897\|ref\|YP_002293981.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|91073328, gi\|... - gi\|91211754\|ref\|YP_541740.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|218705923, gi... - gi\|218705923\|ref\|YP_002413442.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|15832541, gi\|... - gi\|15832541\|ref\|NP_311314.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|224467562, gi... - gi\|224583035\|ref\|YP_002636833.1\| phosphocarrier protein HPr [Salmonella enterica subsp. enterica ser... gi\|110642599, gi... - gi\|110642599\|ref\|YP_670329.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS sys... gi\|110615904, gi... - gi\|110806356\|ref\|YP_689876.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS sys... gi\|89109229, gi\|... - gi\|89109229\|ref\|AP_003009.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst... gi\|215487670, gi... - gi\|215487670\|ref\|YP_002330101.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|217326862, gi... - gi\|217326862\|ref\|ZP_03442945.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. TW14588],... gi\|218548144, gi... - gi\|218548144\|ref\|YP_002381935.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|218361716, gi... - gi\|218554948\|ref\|YP_002387861.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|218559363, gi... - gi\|218559363\|ref\|YP_002392276.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|218690553, gi... - gi\|218690553\|ref\|YP_002398765.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|218352783, gi... - gi\|218696051\|ref\|YP_002403718.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|218700882, gi... - gi\|218700882\|ref\|YP_002408511.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|157158766, gi... - gi\|75187169\|ref\|ZP_00700436.1\| COG1925: Phosphotransferase system, HPr-related proteins [Escherichia... gi\|205337597, gi... - gi\|205337597\|gb\|EDZ24361.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica serovar... gi\|157067560, gi... - gi\|75196428\|ref\|ZP_00706498.1\| COG1925: Phosphotransferase system, HPr-related proteins [Escherichia... gi\|205349347, gi... - gi\|205349347\|gb\|EDZ35978.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica serovar... gi\|194423486, gi... - gi\|83586927\|ref\|ZP_00925558.1\| COG1925: Phosphotransferase system, HPr-related proteins [Escherichia... gi\|195630695, gi... - gi\|195630695\|gb\|EDX49287.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica serovar... gi\|75177827, gi\|... - gi\|75177827\|ref\|ZP_00697889.1\| COG1925: Phosphotransferase system, HPr-related proteins [Shigella bo... gi\|188017059, gi... - gi\|188017059\|gb\|EDU55181.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|75240076, gi\|... - gi\|75240076\|ref\|ZP_00724035.1\| COG1925: Phosphotransferase system, HPr-related proteins [Escherichia... gi\|189364962, gi... - gi\|189364962\|gb\|EDU83378.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|193064768, gi... - gi\|75257228\|ref\|ZP_00728752.1\| COG1925: Phosphotransferase system, HPr-related proteins [Escherichia... gi\|168768507, gi... - gi\|189362212\|gb\|EDU80631.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|191168976, gi... - gi\|75227747\|ref\|ZP_00714476.1\| COG1925: Phosphotransferase system, HPr-related proteins [Escherichia... gi\|187770692, gi... - gi\|187770692\|gb\|EDU34536.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|192955481, gi... - gi\|75233888\|ref\|ZP_00718351.1\| COG1925: Phosphotransferase system, HPr-related proteins [Escherichia... gi\|168778381, gi... - gi\|189003618\|gb\|EDU72604.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|160863769, gi... - gi\|161502422\|ref\|YP_001569534.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|161612824, gi... - gi\|161612824\|ref\|YP_001586789.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|167549556, gi... - gi\|205325392\|gb\|EDZ13231.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica serovar... gi\|83570636, gi\|... - gi\|83570636\|ref\|ZP_00922079.1\| COG1925: Phosphotransferase system, HPr-related proteins [Shigella dy... gi\|167991729, gi... - gi\|205329831\|gb\|EDZ16595.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica serovar... gi\|205333667, gi... - gi\|205333667\|gb\|EDZ20431.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica serovar... gi\|168238917, gi... - gi\|197288361\|gb\|EDY27742.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica serovar... gi\|194470865, gi... - gi\|194470865\|ref\|ZP_03076849.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica ser... gi\|194737670, gi... - gi\|194737670\|ref\|YP_002115498.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica se... gi\|197250208, gi... - gi\|197250208\|ref\|YP_002147385.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica se... gi\|197263757, gi... - gi\|197263757\|ref\|ZP_03163831.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica ser... gi\|197361616, gi... - gi\|197361616\|ref\|YP_002141252.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|118676035, gi... - gi\|146312584\|ref\|YP_001177658.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|198242845, gi... - gi\|198242845\|ref\|YP_002216501.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica se... gi\|124498313, gi... - gi\|124531830\|ref\|ZP_01701937.1\| Phosphotransferase system, phosphocarrier protein HPr [Escherichia c... gi\|200389205, gi... - gi\|200389205\|ref\|ZP_03215817.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica ser... gi\|204929721, gi... - gi\|204929721\|ref\|ZP_03220795.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica ser... gi\|189372307, gi... - gi\|189372307\|gb\|EDU90723.1\| phosphocarrier protein PtsH [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|205344796, gi... - gi\|205344796\|gb\|EDZ31560.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica serovar... gi\|169754230, gi... - gi\|170019302\|ref\|YP_001724256.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|169889859, gi... - gi\|170082024\|ref\|YP_001731344.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ... gi\|170517912, gi... - gi\|170680194\|ref\|YP_001744606.1\| phosphocarrier protein PtsH [Escherichia coli SMS-3-5], gi\|17051791... gi\|170767204, gi... - gi\|170767204\|ref\|ZP_02901657.1\| phosphocarrier protein PtsH [Escherichia albertii TW07627], gi\|17012... gi\|194443649, gi... - gi\|194443649\|ref\|YP_002041692.1\| phosphocarrier protein PtsH [Salmonella enterica subsp. enterica se... gi\|194449796, gi... - gi\|194449796\|ref\|YP_002046496.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ...	110.0	[0..1]	[84..1]
PTHP_KLEPN - Phosphocarrier protein HPr OS=Klebsiella pneumoniae GN=ptsH PE=3 SV=1 gi\|206577514, gi... - gi\|206577514\|ref\|YP_002237236.1\| phosphocarrier protein HPr [Klebsiella pneumoniae 342], gi\|20656657... gi\|228554655, gi... - gi\|228554655\|gb\|EEK19320.1\| hypothetical protein CIT292_03700 [Citrobacter youngae ATCC 29220], gi\|2... gi\|238548205, gi... - gi\|238895887\|ref\|YP_002920623.1\| PTS family phosphohistidinoprotein-hexose phosphotransferase [Klebs... gi\|237732412, gi... - gi\|237732412\|ref\|ZP_04562893.1\| phosphocarrier protein HPr [Citrobacter sp. 30_2], gi\|226907951\|gb\|E... gi\|150956142, gi... - gi\|152971293\|ref\|YP_001336402.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS ...	110.0	[0..1]	[84..1]
gi\|91774503, gi\|... - gi\|91774503\|ref\|YP_544259.1\| HPrNtr [Methylobacillus flagellatus KT], gi\|91708490\|gb\|ABE48418.1\| HPr...	110.0	[0..1]	[84..1]
gi\|72495532, gi\|... - gi\|73663017\|ref\|YP_301798.1\| phosphocarrier protein HPr [Staphylococcus saprophyticus subsp. saproph...	110.0	[0..1]	[81..1]
gi\|85059679, gi\|... - gi\|85059679\|ref\|YP_455381.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst...	109.0	[0..1]	[84..1]
gi\|37525350, gi\|... - gi\|37525350\|ref\|NP_928694.1\| phosphohistidinoprotein-hexose phosphotransferase component of PTS syst...	109.0	[0..1]	[84..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEKSVTITA KHGIHTRPAA LLVKEAKTFD CDVLVECNGK QASAKSLFKL QTLGLYHGVT  60
   61 VRVFAEGEQA QEAVEKVSTL LITLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1ggrB
Description:	Histidine-containing phosphocarrier protein (HPr)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.70778264466435	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.7398246519874	bayes_pls_golite062009
transporter activity	1.94557075462337	bayes_pls_golite062009
transmembrane transporter activity	1.8285077384404	bayes_pls_golite062009
active transmembrane transporter activity	1.73790085561506	bayes_pls_golite062009
substrate-specific transporter activity	1.57976971135135	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.4723961195197	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.97685688328333	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.61783246115451	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: