YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348161, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	467 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348161, gi|....

Description	E-value	Query Range	Subject Range
gi\|48845511, gi\|... - gi\|78223698\|ref\|YP_385445.1\| anthranilate synthase, component I [Geobacter metallireducens GS-15], g...	564.0	[0..7]	[466..19]
gi\|39997478, gi\|... - gi\|39997478\|ref\|NP_953429.1\| anthranilate synthase component I [Geobacter sulfurreducens PCA], gi\|39...	561.0	[0..7]	[466..19]
gi\|53765249, gi\|... - gi\|75910917\|ref\|YP_325213.1\| anthranilate synthase, component I [Anabaena variabilis ATCC 29413], gi...	557.0	[0..7]	[464..19]
gi\|17227824, gi\|... - gi\|17227824\|ref\|NP_484372.1\| anthranilate synthase component I [Nostoc sp. PCC 7120], gi\|17129673\|db... gi\|25291358 - pir\|\|AG1847 anthranilate synthetase alpha-chain [imported] - Nostoc sp. (strain PCC 7120)	556.0	[0..7]	[464..19]
gi\|88936974, gi\|... - gi\|88936974\|ref\|ZP_01142564.1\| Anthranilate synthase component I [Geobacter uraniumreducens Rf4], gi...	556.0	[0..7]	[464..19]
gi\|67916452, gi\|... - gi\|67916452\|ref\|ZP_00510162.1\| Anthranilate synthase component I [Clostridium thermocellum ATCC 2740... TRPE_CLOTM - Anthranilate synthase component 1 OS=Clostridium thermocellum GN=trpE PE=3 SV=1	555.0	[0..6]	[466..18]
gi\|85859670, gi\|... - gi\|85859670\|ref\|YP_461872.1\| anthranilate synthase component I [Syntrophus aciditrophicus SB], gi\|85...	552.0	[0..7]	[464..19]
gi\|110599895, gi... - gi\|222056522\|ref\|YP_002538884.1\| anthranilate synthase component I [Geobacter sp. FRC-32], gi\|221565...	548.0	[0..7]	[465..19]
gi\|186685226, gi... - gi\|23128201\|ref\|ZP_00110054.1\| COG0147: Anthranilate/para-aminobenzoate synthases component I [Nosto...	547.0	[0..7]	[464..19]
gi\|70732917, gi\|... - gi\|70732917\|ref\|YP_262688.1\| anthranilate synthase component I [Pseudomonas fluorescens Pf-5], gi\|68...	547.0	[0..7]	[463..17]

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Predicted Domain #1

Region A:
Residues: [1-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNRASKQLA SRQLDWTLST ADLFEHFAAE PWAILLDSAN APHLDAKFDI ICVNPIATLI  60
   61 THGELTEIKV QLPELTIPTQ MSATDDPFTL VNQLLRHWYP QSFACELPFS GGAMGSFSYD 120
  121 LGRRVEAIPN IAAQDIQLGE MNIGFYDWAL IFDYQQQCWH LVHYLGETAL ETQLKIIEAK 180
  181 MAKTVKIAEF TLVTPWAAQL KKADYVKKFN QVQAYLHSGD CYQINLTQRF EAQYQGDEWS 240
  241 AYCKLRSANQ APFSAFMRLN DNTILSISPE RFIQLRGDDI QTKPIKGTLP RHNDPALDKQ 300
  301 AAQILANSPK DRAENVMIVD LLRNDIGKVA APGSVQVPHL FAVESFPAVH HLVSTVTAKL 360
  361 DPQYQACDLL RAAFPGGSIT GAPKIRAMEI IEELEPSRRS LYCGSIGYIS QDGQMDTSIT 420
  421 IRTIVAERGK LYCWAGGGIV ADSDVDAEYQ ESFDKVSRIL PLLENQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	134.0
Match:	1k0eA
Description:	P-aminobenzoate synthase component I
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
anthranilate synthase activity	11.4918303265177	bayes_pls_golite062009
4-amino-4-deoxychorismate synthase activity	9.91522831720207	bayes_pls_golite062009
oxo-acid-lyase activity	9.57649905871948	bayes_pls_golite062009
carbon-carbon lyase activity	2.42362294309332	bayes_pls_golite062009
catalytic activity	2.11110806828104	bayes_pls_golite062009
binding	1.09885424516788	bayes_pls_golite062009
lyase activity	0.454734323696838	bayes_pls_golite062009
protein binding	0.323833479841771	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: