YRC Public Data Repository - Protein Structure Prediction

Protein:	DDL_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	336 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DDL_SHEON.

Description	E-value	Query Range	Subject Range
gi\|109043037 - gi\|109043037\|ref\|XP_001096717.1\| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 1 (alp...	291.0	[0..5]	[331..123]
gi\|114590613 - gi\|114590613\|ref\|XP_516898.2\| PREDICTED: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Pan trogl...	290.0	[0..5]	[336..182]
gi\|62089054 - gi\|62089054\|dbj\|BAD92974.1\| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) variant [Homo sapiens]	287.0	[0..5]	[331..67]
gi\|76670627 - gi\|76670627\|ref\|XP_591194.2\| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) ...	285.0	[0..5]	[331..51]
gi\|28809429 - gi\|28809429\|dbj\|BAC62471.1\| putative acyl-CoA carboxylase alpha chain [Vibrio parahaemolyticus RIMD ... gi\|28809429, gi\|... - gi\|28900983\|ref\|NP_800638.1\| putative acyl-CoA carboxylase alpha chain [Vibrio parahaemolyticus RIMD...	285.0	[0..4]	[331..16]
gi\|186685989, gi... - gi\|23129462\|ref\|ZP_00111289.1\| COG0439: Biotin carboxylase [Nostoc punctiforme PCC 73102], gi\|186685...	284.0	[0..1]	[331..1]

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Predicted Domain #1

Region A:
Residues: [1-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKINLLLLC GGGSAEHDIS LLSANYFETS LAKSEQFNVL RVVLDKFGQY QTAAGDDCEL  60
   61 TNNREIRFRD ESKAPWPVDY VIPCIHGYPG ETGDIQSYFN LIQLPYFGCE SEASSNCFNK 120
  121 ITAKMWFSAL GIPNTPYIFL NQYDDEAIAQ TQAALEKWGS IFVKAASQGS SVGCYKVDEA 180
  181 SKVLGVLKDA FGYAPYVIVE KTIKARELEV AVYEYQGEVI ATLPGEIICD SNTFYTFDEK 240
  241 YAKSSKARTD VVAQNVPTDI SDQIRAYAIK AFKGMKLRHL SRIDFFLTAD NEILLNEINT 300
  301 FPGSTPISMF PKMLQNHGHD FTQYLSLVIN SQLAAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.0
Match:	2i80A
Description:	No description for 2i80A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits