YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373747, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	687 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373747, gi|....

Description	E-value	Query Range	Subject Range
gi\|113889217, gi... - gi\|114047775\|ref\|YP_738325.1\| periplasmic sensor signal transduction histidine kinase [Shewanella sp...	436.0	[0..1]	[686..33]
gi\|117920856, gi... - gi\|78686746\|ref\|ZP_00851509.1\| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Shewa...	436.0	[0..1]	[686..33]
gi\|113970540, gi... - gi\|82497076\|ref\|ZP_00882636.1\| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Shewa...	434.0	[0..1]	[686..33]
gi\|113907751, gi... - gi\|160874989\|ref\|YP_001554305.1\| integral membrane sensor signal transduction histidine kinase [Shew... gi\|149116311, gi... - gi\|217973617\|ref\|YP_002358368.1\| histidine kinase [Shewanella baltica OS223], gi\|217498752\|gb\|ACK469...	431.0	[0..1]	[686..33]
gi\|68543300, gi\|... - gi\|68543300\|ref\|ZP_00583010.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	431.0	[0..1]	[686..33]
gi\|82721779, gi\|... - gi\|82740905\|ref\|ZP_00903638.1\| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Shewa...	431.0	[0..1]	[686..33]
gi\|77810338, gi\|... - gi\|77814686\|ref\|ZP_00813942.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	430.0	[0..1]	[686..33]
gi\|54302436, gi\|... - gi\|54302436\|ref\|YP_132429.1\| sensor histidine kinase [Photobacterium profundum SS9], gi\|46915858\|emb...	409.0	[0..1]	[686..1]
gi\|78367318, gi\|... - gi\|78367318\|ref\|ZP_00837588.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	400.0	[0..1]	[686..33]
gi\|114334091, gi... - gi\|69952987\|ref\|ZP_00640296.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	374.0	[0..1]	[686..32]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKYLRHGQE RTLEGTTQAL ATALHERPKL FDGQASFLKQ VEKSRDLYAY PLAGAILLDG  60
   61 KLNEWQEYQH RFIQYGEANQ IMRADPSAPL TLSFTHMVGQ YDGYLYAFFQ VVDPNVVFRG 120
  121 KNALSVDRND HLSIATLAPD NKFKRYIVAT TQPGWISAFE LPANPKQTVP VTPEVRIQGQ 180
  181 WATTDVGYNI ELRIPLDMVG SKLGFAIADV NDSKYRDVAA V

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.09
Match:	1i82A
Description:	Xylanase 10A
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [222-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGTSALDTVD KLGTVLVPSP EIENIIKGMS HYSSRIWVID KHGRVLAKSG DIRDSNSVWT  60
   61 RTLDDENSNG LWQRFQRDYL H

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [303-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLYYKILTKP PKDFIDSLRD STELNGSHIQ KALAGQQTST WRLTPDNKAV VLAAASPIWI  60
   61 DNNVMGAVVA EETTHGIRTL RNRALEKLFN VILTIMSMGT LALFFFASSI SNRIRKLRDE 120
  121 AENAIDSQGR VRNHLKPSK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.83
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [442-687]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARDEIGDLSR SFASIVGRLG QYTHYLENMS SRLSHELRTP VAVVRSSLEH LNLQTLDKDT  60
   61 QKYVDRAQEG VSRLSMILNN MSEATRLEQS LTQADVTKFP LSQVVSGCMQ GYQMTYPEQR 120
  121 FSIKVPDQPL MMQGVPEYIA QLMDKLIANA IEFCHQGSSI EVTLTQVGKQ ATLLISNLGP 180
  181 QLPVDMSEQI FDSMVSVRDN QTQEKPHLGL GLYIARLVTE FHQGNILARN RSENDGVDIL 240
  241 VTLPLC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits