YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348111, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348111, gi|....

Description	E-value	Query Range	Subject Range
gi\|78691092, gi\|... - gi\|78691092\|ref\|ZP_00855722.1\| Cytochrome-c peroxidase [Shewanella sp. MR-7], gi\|78509486\|gb\|EAP2287...	436.0	[0..1]	[333..1]
gi\|113970553, gi... - gi\|82497064\|ref\|ZP_00882624.1\| Cytochrome-c peroxidase [Shewanella sp. MR-4], gi\|82404898\|gb\|EAP4557...	433.0	[0..1]	[333..1]
gi\|117613200, gi... - gi\|78686758\|ref\|ZP_00851521.1\| Cytochrome-c peroxidase [Shewanella sp. ANA-3], gi\|78505518\|gb\|EAP190...	431.0	[0..1]	[333..1]
gi\|120598538, gi... - gi\|82744164\|ref\|ZP_00906755.1\| Cytochrome-c peroxidase [Shewanella sp. W3-18-1], gi\|82718482\|gb\|EAP5... gi\|146293383, gi... - gi\|77816890\|ref\|ZP_00816016.1\| Cytochrome-c peroxidase [Shewanella putrefaciens CN-32], gi\|77808162\|...	426.0	[0..1]	[333..1]
CCPR_NITEU - Cytochrome c551 peroxidase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=ccp PE=1 SV=... CCPR_NITEU - Cytochrome c551 peroxidase OS=Nitrosomonas europaea GN=ccp PE=1 SV=2	424.0	[0..2]	[328..3]
gi\|93357742, gi\|... - gi\|94313890\|ref\|YP_587099.1\| di-haem cytochrome c peroxidase [Ralstonia metallidurans CH34], gi\|9335...	422.0	[0..4]	[328..17]
gi\|18655787, gi\|... - gi\|18655789\|pdb\|1IQC\|D Chain D, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas Europaea, ...	420.0	[0..22]	[328..1]
gi\|125997951, gi... - gi\|68542091\|ref\|ZP_00581827.1\| Cytochrome-c peroxidase [Shewanella baltica OS155], gi\|68520163\|gb\|EA...	420.0	[0..1]	[329..1]
gi\|28806710, gi\|... - gi\|28898492\|ref\|NP_798097.1\| cytochrome c551 peroxidase [Vibrio parahaemolyticus RIMD 2210633], gi\|2... gi\|28806710 - gi\|28806710\|dbj\|BAC59981.1\| cytochrome c551 peroxidase [Vibrio parahaemolyticus RIMD 2210633]	420.0	[0..1]	[325..17]
gi\|160875760, gi... - gi\|160875760\|ref\|YP_001555076.1\| cytochrome-c peroxidase [Shewanella baltica OS195], gi\|160861282\|gb...	419.0	[0..1]	[329..1]

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Predicted Domain #1

Region A:
Residues: [1-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKLTAIAIT LTAIFASSYA VAAEPIEVIT PAKITEPEKV ELGKMLFFEP RLSKSGFISC  60
   61 NSCHNLSTGG VDALPTSIGH HWQEGPINSP TVLNADFMLA QFWDGRASNL KEQAAGPIAN 120
  121 PKEMGFTHEL ATETIASMPA YRARFAKVYG DEKVDIDRLT DAIAAFEKTL VTPNSPFDQY 180
  181 LLGKQDAISG DAKAGYQLFK DKGCVSCHNG PAVGGTMFMK MGLIKPFHTN NPAEGRKGVT 240
  241 GKDADKFVFK VPTLRNIELT YPYFHDGSVW TLEEAVNTMA DIQLGQKLTE KETKEMVAFL 300
  301 NSLTGEQPQI SLPILPPSNK ETPRPVPFAT GAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1iqcA
Description:	Di-heme cytochrome c peroxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
electron carrier activity	0.249030304384149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: