YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348068, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348068, gi|....

Description	E-value	Query Range	Subject Range
gi\|186682967, gi... - gi\|53686793\|ref\|ZP_00345025.1\| COG3899: Predicted ATPase [Nostoc punctiforme PCC 73102], gi\|18668296...	227.0	[0..6]	[299..1534]
gi\|71671940, gi\|... - gi\|71674964\|ref\|ZP_00672710.1\| Protein kinase:GAF:ATP-binding region, ATPase-like:Histidine kinase A...	222.0	[0..10]	[298..1499]
gi\|83643564, gi\|... - gi\|83643564\|ref\|YP_431999.1\| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396], gi...	221.0	[0..1]	[308..110]
gi\|17132320, gi\|... - gi\|17230717\|ref\|NP_487265.1\| two-component sensor histidine kinase [Nostoc sp. PCC 7120], gi\|1713232... gi\|25530042 - pir\|\|AB2209 two-component sensor histidine kinase alr3225 [imported] - Nostoc sp. (strain PCC 7120)	218.0	[0..3]	[300..672]
gi\|75910912, gi\|... - gi\|75910912\|ref\|YP_325208.1\| Serine/threonine protein kinase and Signal transduction histidine kinas...	218.0	[0..13]	[299..1498]

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Predicted Domain #1

Region A:
Residues: [1-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSENPYYV AYLREKKARQ EVEQLLEDST RQLYEKNVLL QQQIDLIKQQ QQSMIQQEKL  60
   61 ASLGTVAAGV AHEINNPLAY ILSNVRSLIS YAQDLLASMD EGDKQQIDQA KLQFIKEDLP 120
  121 ELASDTCQGL MRIKDIVNHL LFFARTDSTG KSVIQLVDAL EFSLKLLRPM LNNVLIKKEI 180
  181 SHVPMILFNV GELNQVLMNI IVNAYQACDV VSDRPSEIRL KLTQSDTNIC LTVVDNGCGM 240
  241 DEYTLGRMFD AFYTTKPVGT GTGVGMSIVL QILRQHDCTI EVKSEPDNGT EVMILFPIDP 300
  301 QAVYMTSSSI T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.30103
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits