YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373665, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	476 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373665, gi|....

Description	E-value	Query Range	Subject Range
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	265.0	[0..24]	[475..6]
gi\|49331784, gi\|... - gi\|49480228\|ref\|YP_034908.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ...	258.0	[0..21]	[475..1]
gi\|51978130, gi\|... - gi\|52144661\|ref\|YP_082167.1\| sensor histidine kinase [Bacillus cereus E33L], gi\|51978130\|gb\|AAU19680...	257.0	[0..21]	[475..1]
gi\|167635201, gi... - gi\|167635201\|ref\|ZP_02393517.1\| sensor histidine kinase [Bacillus anthracis str. A0442], gi\|16752946... gi\|165872713, gi... - gi\|165872713\|ref\|ZP_02217342.1\| sensor histidine kinase [Bacillus anthracis str. A0488], gi\|16471157... gi\|170667007, gi... - gi\|170689022\|ref\|ZP_02880222.1\| sensor histidine kinase [Bacillus anthracis str. A0465], gi\|17066700... gi\|167511106, gi... - gi\|167640886\|ref\|ZP_02399144.1\| sensor histidine kinase [Bacillus anthracis str. A0193], gi\|16751110... gi\|177652843, gi... - gi\|177652843\|ref\|ZP_02935216.1\| sensor histidine kinase [Bacillus anthracis str. A0174], gi\|17208187... gi\|170708472, gi... - gi\|170708472\|ref\|ZP_02898914.1\| sensor histidine kinase [Bacillus anthracis str. A0389], gi\|17012659... gi\|49177569, gi\|... - gi\|49183642\|ref\|YP_026894.1\| sensor histidine kinase [Bacillus anthracis str. Sterne], gi\|49177569\|g... gi\|227816480, gi... - gi\|227816480\|ref\|YP_002816489.1\| sensor histidine kinase [Bacillus anthracis str. CDC 684], gi\|22700... gi\|47525929, gi\|... - gi\|47525929\|ref\|YP_017278.1\| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|229266529, gi... - gi\|229602121\|ref\|YP_002865248.1\| sensor histidine kinase [Bacillus anthracis str. A0248], gi\|2292665... gi\|30254253, gi\|... - gi\|30260804\|ref\|NP_843181.1\| sensor histidine kinase [Bacillus anthracis str. Ames], gi\|30254253\|gb\|... gi\|254684273 - gi\|254684273\|ref\|ZP_05148133.1\| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi\|21398611, gi\|... - gi\|65318076\|ref\|ZP_00391035.1\| COG0642: Signal transduction histidine kinase [Bacillus anthracis str... gi\|254722077 - gi\|254722077\|ref\|ZP_05183866.1\| sensor histidine kinase [Bacillus anthracis str. A1055] gi\|254738738 - gi\|254738738\|ref\|ZP_05196441.1\| sensor histidine kinase [Bacillus anthracis str. Western North Ameri... gi\|254742050 - gi\|254742050\|ref\|ZP_05199737.1\| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi\|254754963 - gi\|254754963\|ref\|ZP_05206997.1\| sensor histidine kinase [Bacillus anthracis str. Vollum] gi\|190568579, gi... - gi\|190568579\|ref\|ZP_03021485.1\| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|254762306 - gi\|254762306\|ref\|ZP_05214150.1\| sensor histidine kinase [Bacillus anthracis str. Australia 94]	256.0	[0..21]	[475..1]
gi\|47568102, gi\|... - gi\|47568102\|ref\|ZP_00238807.1\| sensory box histidine kinase PhoR, putative [Bacillus cereus G9241], ...	254.0	[0..21]	[475..1]
gi\|74490416, gi\|... - gi\|75762098\|ref\|ZP_00742003.1\| Two component system histidine kinase [Bacillus thuringiensis serovar...	252.0	[0..30]	[475..19]
gi\|152974373, gi... - gi\|89203396\|ref\|ZP_01182066.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	252.0	[0..21]	[476..1]
gi\|46908753, gi\|... - gi\|46908753\|ref\|YP_015142.1\| sensor histidine kinase [Listeria monocytogenes str. 4b F2365], gi\|4688... gi\|47094035, gi\|... - gi\|47094035\|ref\|ZP_00231765.1\| sensor histidine kinase [Listeria monocytogenes str. 4b H7858], gi\|47...	252.0	[0..21]	[476..1]
gi\|89155894, gi\|... - gi\|89206170\|ref\|ZP_01184732.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	252.0	[0..21]	[475..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTLTINNGD NRVNRLKVLD VYSLRLLLTL LMLSGISLSV GISSWLSTRD AKHQIEELFD  60
   61 AQMLQTAKML ELFYHDEADF KHPQSQPQVL HVPDSQVSSF AEKSDALKLA YEHKLAFQIW 120
  121 SEAGQALVFS D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.561	a.25.1	Ferritin-like
View	Download	0.504	a.19.1	Fertilization protein
View	Download	0.503	c.57.1	Molybdenum cofactor biosynthesis proteins
View	Download	0.494	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain
View	Download	0.426	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain

Predicted Domain #2

Region A:
Residues: [132-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIGREPLTKF EQGYSKRVFE GELWHVFSFL SAKYKVWIIT AQQDEVRQEL VSQIMHNAVI  60
   61 VPLIVVPLTL LIVSLLFYIL FRPLKTFERE LMARSPNDLT PLAMS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.19
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [237-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKELVPVRL ALNQYISSIA RFIARERRFS ADAAHELKTP LSVIKLHQQG LEGLVGDDPA  60
   61 QHIHLAAIDA GVKHMSHTVE QLLLLARVDS IAELNVQSYA LLPMVEDALN QLMPLITEYE 120
  121 WNIDVDAGLI LKCDRFYWLV VLKNIIENAC KYSPIETEIS ISAVQVAAGV EIKIADRGQG 180
  181 MTSEQIANAT ERFYRVNENE GIGAGLGLSI CHHIIGLHQG QLTIASREQA GLAVTLFLPQ 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits