YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347997, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347997, gi|....

Description	E-value	Query Range	Subject Range
gi\|50120173, gi\|... - gi\|50120173\|ref\|YP_049340.1\| hydrogenase nickel incorporation protein HypB [Pectobacterium atrosepti...	174.0	[0..1]	[255..1]
gi\|24053138, gi\|... - gi\|24114018\|ref\|NP_708528.1\| hydrogenase nickel incorporation protein HypB [Shigella flexneri 2a str... gi\|30064081, gi\|... - gi\|30064081\|ref\|NP_838252.1\| hydrogenase nickel incorporation protein HypB [Shigella flexneri 2a str... gi\|110806646, gi... - gi\|110806646\|ref\|YP_690166.1\| hydrogenase nickel incorporation protein HypB [Shigella flexneri 5 str...	171.0	[0..1]	[253..1]
HYPB_ECOL6 - Hydrogenase isoenzymes nickel incorporation protein hypB OS=Escherichia coli O6 GN=hypB PE=3 SV=1 HYPB_ECOL6 - Hydrogenase isoenzymes nickel incorporation protein HypB OS=Escherichia coli O6:H1 (strain CFT073 / ... EG10484 - GTP hydrolase involved in nickel liganding into hydrogenases / Required for metallocenter assembly i... gi\|170682287, gi... - gi\|170682287\|ref\|YP_001744876.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherich... gi\|209920166, gi... - gi\|209920166\|ref\|YP_002294250.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli SE1... gi\|215266115, gi... - gi\|215488043\|ref\|YP_002330474.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli O12... gi\|218362039, gi... - gi\|218555271\|ref\|YP_002388184.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli IAI... gi\|218428415, gi... - gi\|218690851\|ref\|YP_002399063.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli ED1... gi\|218701219, gi... - gi\|218701219\|ref\|YP_002408848.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli IAI... EG10484 - GTP hydrolase involved in nickel liganding into hydrogenases / Required for metallocenter assembly i... gi\|110642850, gi... - gi\|110642850\|ref\|YP_670580.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli 536], ... gi\|190908247, gi... - gi\|75241671\|ref\|ZP_00725508.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|193065027, gi... - gi\|75256929\|ref\|ZP_00728505.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|75230067, gi\|... - gi\|75230067\|ref\|ZP_00716577.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|75235678, gi\|... - gi\|75235678\|ref\|ZP_00719852.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|81246611, gi\|... - gi\|82545200\|ref\|YP_409147.1\| hydrogenase nickel incorporation protein HypB [Shigella boydii Sb227], ... gi\|254162658, gi... - gi\|254162658\|ref\|YP_003045766.1\| HypB [Escherichia coli B str. REL606], gi\|253974559\|gb\|ACT40230.1\| ... gi\|89109514, gi\|... - gi\|89109514\|ref\|AP_003294.1\| GTP hydrolase involved in nickel liganding into hydrogenases [Escherich... gi\|254037767, gi... - gi\|254037767\|ref\|ZP_04871825.1\| hydrogenase nickel incorporation protein HypB [Escherichia sp. 1_1_4... gi\|188489002, gi... - gi\|75512363\|ref\|ZP_00734915.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|253323462, gi... - gi\|254289419\|ref\|YP_003055167.1\| GTP hydrolase involved in nickel liganding into hydrogenases [Esche... HYPB_ECOLI - Hydrogenase isoenzymes nickel incorporation protein hypB - Escherichia coli gi\|74313294, gi\|... - gi\|74313294\|ref\|YP_311713.1\| hydrogenase nickel incorporation protein HypB [Shigella sonnei Ss046], ... gi\|251786010, gi... - gi\|251786010\|ref\|YP_003000314.1\| hypothetical protein B21_02542 [Escherichia coli BL21], gi\|24237828... gi\|238861388, gi... - gi\|238901864\|ref\|YP_002927660.1\| GTP hydrolase involved in nickel liganding into hydrogenases [Esche... gi\|157067854, gi... - gi\|75196702\|ref\|ZP_00706772.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|194414128, gi... - gi\|75210928\|ref\|ZP_00711052.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|194422090, gi... - gi\|83585614\|ref\|ZP_00924257.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|124528093, gi... - gi\|124528093\|ref\|ZP_01699446.1\| hydrogenase accessory protein HypB [Escherichia coli B], gi\|12450098... gi\|170019027, gi... - gi\|170019027\|ref\|YP_001723981.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli ATC... gi\|187732261, gi... - gi\|75176412\|ref\|ZP_00696556.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|170082303, gi... - gi\|170082303\|ref\|YP_001731623.1\| GTP hydrolase involved in nickel liganding into hydrogenases [Esche...	171.0	[0..1]	[253..1]
gi\|75187449, gi\|... - gi\|75187449\|ref\|ZP_00700716.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and...	171.0	[0..1]	[253..1]
gi\|117624959, gi... - gi\|117624959\|ref\|YP_853947.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli APEC O... gi\|218559717, gi... - gi\|218559717\|ref\|YP_002392630.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli S88... gi\|91073661, gi\|... - gi\|91212087\|ref\|YP_542073.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli UTI89],... gi\|226899689, gi... - gi\|237706649\|ref\|ZP_04537130.1\| hydrogenase nickel incorporation protein HypB [Escherichia sp. 3_2_5...	171.0	[0..1]	[253..1]
gi\|41776 - gi\|41776\|emb\|CAA38413.1\| hydrogenase isoenzyme hypB [Escherichia coli]	170.0	[0..1]	[253..1]
gi\|23130555, gi\|... - gi\|23130555\|ref\|ZP_00112368.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|12232079 - gi\|12232079\|gb\|AAG49381.1\|AF325724_4 HypB-like protein [Nostoc punctiforme]	170.0	[0..1]	[258..1]
gi\|24935222, gi\|... - gi\|75910804\|ref\|YP_325100.1\| hydrogenase accessory protein HypB [Anabaena variabilis ATCC 29413], gi...	170.0	[0..1]	[257..1]
gi\|83569908, gi\|... - gi\|83569908\|ref\|ZP_00921356.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and...	169.0	[0..1]	[253..1]
gi\|81242241, gi\|... - gi\|82778093\|ref\|YP_404442.1\| hydrogenase nickel incorporation protein HypB [Shigella dysenteriae Sd1...	169.0	[0..1]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCKDCGCSLP RHSAIQQEHD HHTGHSHDHS HIHQQLHTNP QLNDKKTLSV IHKILDKNDV  60
   61 EAAHNRAHFE AHHITAFNLM SSPGSGKTTL LEHLKEYTKL NYAVIEGDLE TSRDADRLIA 120
  121 KGIKAHQIQT GSACHLDAFM VHGALHHLPL EGVDICFVEN VGNLVCPASY DVGTHKNIVL 180
  181 LSVPEGDDKI EKYPVMFRRA DLVLITKCDL LPYFDFSVDE AKTQLKKLNP NTQILEVSIK 240
  241 DGDSMHAVAA WLNSNLRPAS GEPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.154902
Match:	2hf8A
Description:	No description for 2hf8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits