YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347996, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347996, gi|....

Description	E-value	Query Range	Subject Range
gi\|82405686, gi\|... - gi\|82496330\|ref\|ZP_00881899.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Shewanella sp. ...	105.0	[0..1]	[81..1]
gi\|117920315, gi... - gi\|78684978\|ref\|ZP_00849759.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Shewanella sp. ...	105.0	[0..1]	[81..1]
gi\|78510878, gi\|... - gi\|78689718\|ref\|ZP_00854376.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Shewanella sp. ...	104.0	[0..1]	[81..1]
gi\|186680890, gi... - gi\|53688951\|ref\|ZP_00112364.2\| COG0298: Hydrogenase maturation factor [Nostoc punctiforme PCC 73102]...	102.0	[0..1]	[77..1]
HYPC_HELHP - Hydrogenase expression/formation protein hypC OS=Helicobacter hepaticus GN=hypC PE=3 SV=1 HYPC_HELHP - Hydrogenase expression/formation protein HypC OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN...	100.0	[0..1]	[78..1]
gi\|120598982, gi... - gi\|82740632\|ref\|ZP_00903369.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Shewanella sp. ... gi\|77809643, gi\|... - gi\|77815358\|ref\|ZP_00814592.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Shewanella putr...	100.0	[0..1]	[81..1]
gi\|7515025, gi\|5... - pir\|\|F75031 hydrogenase expression/formation protein (hypc) PAB7315 - Pyrococcus abyssi (strain Orsa... gi\|14521441, gi\|... - gi\|5458660\|emb\|CAB50147.1\| hypC hydrogenase expression/formation protein [Pyrococcus abyssi GE5], gi...	100.0	[0..1]	[78..1]
gi\|75910799, gi\|... - gi\|75910799\|ref\|YP_325095.1\| hydrogenase expression/formation protein (HUPF/HYPC) [Anabaena variabil...	100.0	[0..1]	[77..1]
gi\|222823794, gi... - gi\|57241261\|ref\|ZP_00369208.1\| hydrogenase assembly chaperone hypC/hupF [Campylobacter lari RM2100],...	99.0	[0..1]	[78..1]
gi\|17130040, gi\|... - gi\|17228190\|ref\|NP_484738.1\| hydrogenase expression/formation protein [Nostoc sp. PCC 7120], gi\|1713... gi\|25313751 - pir\|\|AE1893 hydrogenase expression/formation protein [imported] - Nostoc sp. (strain PCC 7120)	98.0	[0..1]	[76..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLSIPSQVV AVDNERQSVT VDTLGVRRDV SSHLMTEPLA IGDYVLIHIG FVMNKIDRND  60
   61 ALQSLELYQE IVSKLENETT H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.045757
Match:	2z1cA
Description:	No description for 2z1cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits