YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347925, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347925, gi|....

Description	E-value	Query Range	Subject Range
gi\|42525368\|gb\|A... - Int1 DNA integrase [Salmonella typhimurium] gi\|42525368 - gi\|42525368\|gb\|AAS18383.1\| Int1 DNA integrase [Salmonella typhimurium]	219.0	[0..8]	[304..17]
gi\|134034958 - gi\|134034958\|gb\|ABO46012.1\| integrase [Enterobacter cloacae] gi\|157412100 - gi\|157412100\|ref\|YP_001481441.1\| IntI1 integrase [Escherichia coli APEC O1] gi\|226876274 - gi\|226876274\|gb\|ACO89459.1\| IntI1 integrase [Cloning vector pPSX] gi\|152973776, gi... - gi\|152973776\|ref\|YP_001338815.1\| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578], gi\|1... gi\|197287812, gi... - gi\|197287812\|gb\|EDY27202.1\| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwa... gi\|161867947, gi... - gi\|161867947\|ref\|YP_001598128.1\| hypothetical protein pOU7519_85 [Salmonella enterica subsp. enteric... gi\|78709991 - gi\|78709991\|gb\|ABB48427.1\| IntI1 integrase [Salmonella enterica subsp. enterica serovar Kentucky] gi\|134047152, gi... - gi\|134047152\|ref\|YP_001102016.1\| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. ent... gi\|224983001 - gi\|224983001\|gb\|ACN73419.1\| IntI1 [Acinetobacter sp. NFM2] gi\|72536052, gi\|... - gi\|72536052\|gb\|AAZ73121.1\| IntI1 [Klebsiella pneumoniae], pir\|\|S32184 integrase - Klebsiella pneumon... gi\|169150459, gi... - gi\|90265400\|emb\|CAJ77082.1\| Integrase [Acinetobacter baumannii], gi\|70905581\|gb\|AAZ14844.1\| IntI1 [A... gi\|108945866 - gi\|108945866\|gb\|ABG23475.1\| integrase [Morganella morganii] gi\|223868914 - gi\|223868914\|gb\|ACN22478.1\| integrase 1 [Klebsiella oxytoca] gi\|1572565, gi\|1... - pir\|\|T08516 integrase - Enterobacter aerogenes plasmid R751, gi\|1572565\|gb\|AAC64460.1\| Int [Enterob... gi\|78057541, gi\|... - gi\|84180556\|gb\|ABC54721.1\| IntI1 [Vibrio cholerae], gi\|78057541\|gb\|ABB17271.1\| site-specific recombi... gi\|184156542, gi... - gi\|184156542\|ref\|YP_001844881.1\| integrase [Acinetobacter baumannii ACICU], gi\|183208136\|gb\|ACC55534... gi\|288634 - gi\|288634\|emb\|CAA51182.1\| integrase [Klebsiella aerogenes] gi\|45758101, gi\|... - gi\|60115543\|ref\|YP_209334.1\| hypothetical protein SC029 [Salmonella enterica subsp. enterica serovar... gi\|169797532 - gi\|169797532\|ref\|YP_001715325.1\| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi\|13508544 - gi\|13508544\|emb\|CAC35169.1\| DNA integrase IntI1 [Achromobacter denitrificans] gi\|126635814, gi... - gi\|30524990\|emb\|CAD56838.1\| Integrase INTI1 [Pseudomonas aeruginosa], gi\|222353664\|emb\|CAU08341.1\| i... gi\|53136974, gi\|... - gi\|53793938\|ref\|YP_112391.1\| DNA integrase [uncultured bacterium], gi\|53136974\|emb\|CAG30882.1\| DNA i... gi\|99867125, gi\|... - gi\|99867125\|gb\|ABF67770.1\| IntI1 integrase [Escherichia coli APEC O1], gi\|86212237\|tpd\|FAA00063.1\| T...	217.0	[0..8]	[304..17]
gi\|45766 - gi\|45766\|emb\|CAA33849.1\| unnamed protein product [Plasmid R1033] gi\|77659, gi\|530804 - pir\|\|JQ0300 hypothetical 38.4K protein - Pseudomonas aeruginosa, gi\|530804\|gb\|AAB59999.1\| IntI1 inte...	216.0	[0..8]	[304..17]
gi\|47155069, gi\|... - gi\|47155069\|emb\|CAG26808.1\| DNA integrase [Acinetobacter baumannii], gi\|17386060\|gb\|AAL38574.1\|AF445... gi\|195977009 - gi\|195977009\|gb\|ACG63564.1\| DNA integrase [Citrobacter youngae] gi\|110350561 - gi\|110350561\|emb\|CAK55555.1\| integrase [Pseudomonas putida]	216.0	[0..8]	[304..17]
gi\|1403511 - gi\|1403511\|emb\|CAA67039.1\| integrase [Pseudomonas aeruginosa]	216.0	[0..8]	[304..17]
gi\|7339576 - gi\|7339576\|emb\|CAB82887.1\| integrase [Salmonella enterica subsp. enterica serovar Typhimurium]	216.0	[0..8]	[304..17]
gi\|152063 - gi\|152063\|gb\|AAA91585.1\| recombinase [Plasmid RGN238] gi\|8118290 - gi\|8118290\|gb\|AAF72980.1\|AF255921_1 recombinase [Shigella flexneri]	215.0	[0..8]	[304..17]
gi\|91708752, gi\|... - gi\|91774765\|ref\|YP_544521.1\| integron integrase [Methylobacillus flagellatus KT], gi\|91708752\|gb\|ABE...	215.0	[0..5]	[319..16]
gi\|207581351 - gi\|207581351\|gb\|ACI24747.1\| integrase [Salmonella enterica subsp. enterica serovar Newport] gi\|88702681 - gi\|88702681\|gb\|ABD49194.1\| integrase [Achromobacter xylosoxidans] gi\|89211896 - gi\|89211896\|gb\|ABD63310.1\| IntI1 [Bordetella bronchiseptica] gi\|225730198 - gi\|225730198\|gb\|ACO24910.1\| integrase [Enterobacter aerogenes] gi\|227809552 - gi\|227809552\|gb\|ACP40994.1\| DNA integrase intI1 [Shigella flexneri] gi\|160431700, gi... - gi\|160431700\|ref\|YP_001552088.1\| integrase [Salmonella enterica subsp. enterica serovar Dublin], gi\|... gi\|116294895 - gi\|116294895\|gb\|ABJ98410.1\| IntI1 [Shigella flexneri 5] gi\|142856088, gi... - gi\|145301311\|ref\|YP_001144151.1\| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A44... gi\|187736864 - gi\|187736864\|ref\|YP_001816602.1\| IntI1 [Escherichia coli 1520] gi\|170522112, gi... - gi\|170650836\|ref\|YP_001740003.1\| integrase/recombinase [Escherichia coli SMS-3-5], gi\|170522112\|gb\|A... gi\|194709356, gi... - gi\|194733854\|ref\|YP_002112947.1\| integrase/recombinase [Salmonella enterica subsp. enterica serovar ... gi\|194439843, gi... - gi\|194439843\|ref\|ZP_03071908.1\| integrase/recombinase [Escherichia coli 101-1], gi\|194421233\|gb\|EDX3... gi\|194326135 - gi\|194326135\|emb\|CAQ64786.1\| intergrase [Cloning vector pRG930cm] gi\|170293866 - gi\|170293866\|gb\|ACB13001.1\| IntI1 [Hydrogenophaga sp. PL2G6] gi\|54887458, gi\|... - gi\|54887458\|emb\|CAG34236.1\| IntI1 integrase [Salmonella typhimurium], gi\|54887450\|emb\|CAG34228.1\| In... gi\|34556020, gi\|... - gi\|34556020\|emb\|CAD57194.1\| integrase [Aeromonas salmonicida], gi\|29329827\|emb\|CAD57181.1\| integrase... gi\|9507567, gi\|5... - gi\|9507567\|ref\|NP_052898.1\| integrase [Plasmid R100], gi\|5103166\|dbj\|BAA78802.1\| integrase for In2 [... gi\|16505880, gi\|... - gi\|18466564\|ref\|NP_569372.1\| putative integrase [Salmonella enterica subsp. enterica serovar Typhi s... gi\|51470601, gi\|... - gi\|51492558\|ref\|YP_067855.1\| integrase/recombinase [Aeromonas punctata], gi\|51470601\|emb\|CAG15092.1\|... gi\|45502089, gi\|... - gi\|45502089\|emb\|CAF31510.1\| IntI1 DNA integrase [Salmonella enterica], gi\|145848971\|emb\|CAM91521.1\| ... gi\|112553509, gi... - gi\|55275332\|ref\|YP_133854.1\| DNA integrase [uncultured bacterium], gi\|54969638\|emb\|CAG27804.1\| DNA i... gi\|17342661, gi\|... - gi\|17530624\|ref\|NP_511222.1\| integrase [IncN plasmid R46], gi\|17342661\|gb\|AAL13418.1\| integrase [Inc... gi\|77734001, gi\|... - gi\|77993248\|ref\|YP_358838.1\| integrase [IncP-1beta multiresistance plasmid pB8], gi\|77734001\|emb\|CAI... gi\|45758127, gi\|... - gi\|60115569\|ref\|YP_209361.1\| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str... gi\|194430536, gi... - gi\|75208144\|ref\|ZP_00708527.1\| COG0582: Integrase [Escherichia coli B171], gi\|194430536\|ref\|ZP_03063... gi\|81072647, gi\|... - gi\|81072647\|gb\|ABB55351.1\| IntI1 integrase [Enterobacter cloacae], gi\|71361872\|gb\|AAZ30042.1\| Integr... gi\|54887458\|emb\|... - IntI1 integrase [Salmonella typhimurium], IntI1 integrase [Salmonella typhimurium] INT2_SALTI - Integrase/recombinase OS=Salmonella typhi GN=int PE=3 SV=1 INT2_ECOLX - Integrase/recombinase OS=Escherichia coli GN=int PE=3 SV=1 tr\|A0A0B5H2Y0\|A0... - Integrase OS=Vibrio cholerae non-O1/non-O139 GN=intI1 PE=4 SV=1 INT2_PSEAI - Integrase/recombinase OS=Pseudomonas aeruginosa GN=int PE=3 SV=1 gi\|133905410, gi... - gi\|89102689\|ref\|ZP_01175304.1\| COG0582: Integrase [Yersinia pestis biovar Orientalis str. IP275], gi... INT2_SALTI - Integrase/recombinase OS=Salmonella typhi GN=int PE=3 SV=1 gi\|89330180 - gi\|89330180\|emb\|CAJ84004.1\| integrase [Salmonella enterica subsp. enterica serovar Keurmassar] gi\|3088617 - gi\|3088617\|gb\|AAC14727.1\| DNA integrase [Plasmid NR79] gi\|45925935 - gi\|45925935\|gb\|AAS79108.1\| integrase [Shigella flexneri 2a] gi\|190410293, gi... - gi\|6752460\|gb\|AAF27722.1\|AF156486_1 integrase INTI1 [Klebsiella pneumoniae], gi\|42543943\|dbj\|BAD1102... gi\|89243390, gi\|... - gi\|89243390\|gb\|ABD64875.1\| integrase [Aeromonas hydrophila], gi\|190570443\|ref\|YP_001966865.1\| integr... gi\|596251, gi\|81... - gi\|8176635\|emb\|CAB92435.1\| class 1 integrase [Acinetobacter baumannii], gi\|596251\|gb\|AAA56784.1\| int... gi\|111038080, gi... - gi\|111038080\|ref\|YP_709167.1\| IntI1 integrase [IncP-1 plasmid pKJK5], gi\|110781085\|emb\|CAK02669.1\| I... gi\|48526060 - gi\|48526060\|gb\|AAT45232.1\| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis] gi\|92112119 - gi\|92112119\|gb\|ABE73722.1\| integrase [Acidovorax sp. MUL2G8] gi\|151817 - gi\|151817\|gb\|AAB59081.1\| IntI1 integrase [Plasmid R46] gi\|92112131 - gi\|92112131\|gb\|ABE73754.1\| integrase [Burkholderiales bacterium MUL2G11]	215.0	[0..8]	[304..17]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKSPFLSG LQQEMRMRGY SIRTEKTYLY WIKAFINFHG KRHPETMGTE EVAQFLTFLA  60
   61 NQRNVAINTQ KIALNALAYL YQKHLHHELG DLGFCYATKQ RYLPTVLSPS EISLILNELD 120
  121 GRDRLIIELL YGSGLRVSEC LRLRIQDIDI ESASLTVRDG KGHKDRQTIL SHRCAEKLTT 180
  181 YIEKAIKIQQ DDNQQGIGPS LPNALERKYP NAFRQHGWMF IFPSTSTCIN PYTGTLCRHH 240
  241 LHQSVIRKAL GNAVRNIQMN KRVTCHTFRH SFATHLLQAG RDIRSVQELL GHNDVSTTQI 300
  301 YTHVLGQHFA GTTSPLDTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	2a3vA
Description:	No description for 2a3vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits