YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347897, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347897, gi|....

Description	E-value	Query Range	Subject Range
APT_HAEIN - Adenine phosphoribosyltransferase OS=Haemophilus influenzae GN=apt PE=3 SV=1 APT_HAEIG - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain PittGG) GN=apt PE=3 SV=1 gi\|42631865 - gi\|42631865\|ref\|ZP_00157403.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|145271773, gi... - gi\|145639211\|ref\|ZP_01794818.1\| adenine phosphoribosyltransferase [Haemophilus influenzae PittII], g... APT_HAEI8 - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain 86-028NP) GN=apt PE=3 SV=1 gi\|144978790, gi... - gi\|145629287\|ref\|ZP_01785086.1\| adenine phosphoribosyltransferase [Haemophilus influenzae 22.1-21], ... APT_HAEIN - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ... gi\|229810356, gi... - gi\|229846867\|ref\|ZP_04466974.1\| adenine phosphoribosyltransferase [Haemophilus influenzae 7P49H1], g...	166.0	[0..1]	[180..1]
gi\|78358828, gi\|... - gi\|78369155\|ref\|ZP_00839293.1\| Adenine phosphoribosyl transferase [Shewanella sp. PV-4], gi\|78358828...	166.0	[0..1]	[181..17]
gi\|42629427 - gi\|42629427\|ref\|ZP_00154974.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	165.0	[0..1]	[180..1]
APT_YERP3 - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=... APT_YERPY - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=apt ... APT_YERPB - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=apt P...	164.0	[0..2]	[180..8]
gi\|149365028, gi... - gi\|149365028\|ref\|ZP_01887063.1\| adenine phosphoribosyltransferase [Yersinia pestis CA88-4125], gi\|14... gi\|89104116, gi\|... - gi\|89104116\|ref\|ZP_01176669.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... APT_YERPP - Adenine phosphoribosyltransferase OS=Yersinia pestis (strain Pestoides F) GN=apt PE=3 SV=1 gi\|21957808, gi\|... - gi\|22124966\|ref\|NP_668389.1\| adenine phosphoribosyltransferase [Yersinia pestis KIM], gi\|21957808\|gb... APT_YERPA - Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=apt PE=3 SV=1 APT_YERPN - Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=apt PE=3 SV=1 gi\|16123288, gi\|... - gi\|218930156\|ref\|YP_002348031.1\| adenine phosphoribosyltransferase [Yersinia pestis CO92], gi\|161232... gi\|45435513, gi\|... - gi\|45440655\|ref\|NP_992194.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Microtus str.... APT_YERPG - Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=apt PE=3 SV=1 gi\|167051059, gi... - gi\|167398555\|ref\|ZP_02304079.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Antiqua st... gi\|166205724, gi... - gi\|166212937\|ref\|ZP_02238972.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Antiqua st... gi\|167057291, gi... - gi\|167423121\|ref\|ZP_02314874.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Mediaevali... gi\|167422744, gi... - gi\|167422744\|ref\|ZP_02314497.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Orientalis... APT_YERPE - Adenine phosphoribosyltransferase OS=Yersinia pestis GN=apt PE=3 SV=1 gi\|167470064 - gi\|167470064\|ref\|ZP_02334768.1\| adenine phosphoribosyltransferase [Yersinia pestis FV-1] gi\|165990046, gi... - gi\|166011046\|ref\|ZP_02231944.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Antiqua st... gi\|165927630, gi... - gi\|165927630\|ref\|ZP_02223462.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Orientalis... gi\|229838723, gi... - gi\|229838723\|ref\|ZP_04458882.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Orientalis... gi\|229896120, gi... - gi\|229896120\|ref\|ZP_04511290.1\| adenine phosphoribosyltransferase [Yersinia pestis Pestoides A], gi\|... gi\|229899291, gi... - gi\|229899291\|ref\|ZP_04514434.1\| adenine phosphoribosyltransferase [Yersinia pestis biovar Orientalis...	164.0	[0..2]	[180..8]
APT_YERPS - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis GN=apt PE=3 SV=1 APT_YERPS - Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=apt ...	164.0	[0..2]	[180..8]
APT_MASHI - Adenine phosphoribosyltransferase OS=Mastomys hildebrandtii GN=APRT PE=3 SV=1	163.0	[0..1]	[179..1]
gi\|153224177, gi... - gi\|153224177\|ref\|ZP_01954267.1\| adenine phosphoribosyltransferase [Vibrio cholerae MAK 757], gi\|1241... gi\|124123534, gi... - gi\|153800943\|ref\|ZP_01955529.1\| adenine phosphoribosyltransferase [Vibrio cholerae MZO-3], gi\|124123... gi\|153819383, gi... - gi\|153819383\|ref\|ZP_01972050.1\| adenine phosphoribosyltransferase [Vibrio cholerae NCTC 8457], gi\|12... APT_VIBCM - Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=apt PE=3 SV=1 gi\|229350943, gi... - gi\|229510978\|ref\|ZP_04400457.1\| adenine phosphoribosyltransferase [Vibrio cholerae B33], gi\|22935094... gi\|150422319, gi... - gi\|254291726\|ref\|ZP_04962512.1\| adenine phosphoribosyltransferase [Vibrio cholerae AM-19226], gi\|197... gi\|229505352, gi... - gi\|229505352\|ref\|ZP_04394862.1\| adenine phosphoribosyltransferase [Vibrio cholerae BX 330286], gi\|22... gi\|153828111, gi... - gi\|153828111\|ref\|ZP_01980778.1\| adenine phosphoribosyltransferase [Vibrio cholerae 623-39], gi\|14887... gi\|229515435, gi... - gi\|229515435\|ref\|ZP_04404894.1\| adenine phosphoribosyltransferase [Vibrio cholerae TMA 21], gi\|22934... gi\|153824955, gi... - gi\|153824955\|ref\|ZP_01977622.1\| adenine phosphoribosyltransferase [Vibrio cholerae MZO-2], gi\|149741... gi\|229518099, gi... - gi\|229518099\|ref\|ZP_04407543.1\| adenine phosphoribosyltransferase [Vibrio cholerae RC9], gi\|22934481... gi\|229339523, gi... - gi\|229523160\|ref\|ZP_04412567.1\| adenine phosphoribosyltransferase [Vibrio cholerae TM 11079-80], gi\|... gi\|229339243, gi... - gi\|229525662\|ref\|ZP_04415067.1\| adenine phosphoribosyltransferase [Vibrio cholerae bv. albensis VL42... gi\|229333630, gi... - gi\|229529856\|ref\|ZP_04419246.1\| adenine phosphoribosyltransferase [Vibrio cholerae 12129(1)], gi\|229... gi\|229608371, gi... - gi\|229608371\|ref\|YP_002879019.1\| adenine phosphoribosyltransferase [Vibrio cholerae MJ-1236], gi\|229... APT_VIBCH - Adenine phosphoribosyltransferase OS=Vibrio cholerae GN=apt PE=3 SV=1 APT_VIBC3 - Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogaw... gi\|75822023, gi\|... - gi\|75822023\|ref\|ZP_00751739.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|254226378, gi... - gi\|75818312\|ref\|ZP_00748493.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... APT_VIBCH - Adenine phosphoribosyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N... gi\|116188739, gi... - gi\|75829889\|ref\|ZP_00759179.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|153217530, gi... - gi\|153217530\|ref\|ZP_01951211.1\| adenine phosphoribosyltransferase [Vibrio cholerae 1587], gi\|1241135...	163.0	[0..1]	[180..1]
gi\|15157388, gi\|... - gi\|15889512\|ref\|NP_355193.1\| adenine phosphoribosyltransferase [Agrobacterium tumefaciens str. C58],... gi\|25286869 - gi\|25286869\|pir\|\|A97628 adenine phosphoribosyltransferase (AF109172) [imported] - Agrobacterium tume...	163.0	[0..9]	[180..26]
APT_STOLO - Adenine phosphoribosyltransferase OS=Stochomys longicaudatus GN=APRT PE=3 SV=1	162.0	[0..1]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTETLSLIK QSIKTIPNYP KEGILFRDVT SLLENATAYK ATIDLLVEHY RSKGFTKIVG  60
   61 TEARGFLFGA PLALGLGIGF VPVRKPGKLP RATISQSYEL EYGHDSLEIH TDAITANDKV 120
  121 LVVDDLLATG GTIEATVKLI RQLGGEVQDA AFVISLPDLG GEARLTALGL ELVKLCEFEG 180
  181 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	2dy0A
Description:	No description for 2dy0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits