YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373550, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373550, gi|....

Description	E-value	Query Range	Subject Range
gi\|82405253, gi\|... - gi\|82496678\|ref\|ZP_00882243.1\| RNA polymerase sigma-70 factor, ECF subfamily [Shewanella sp. MR-4], ...	161.0	[0..1]	[222..1]
gi\|196253313, gi... - gi\|196253313\|ref\|ZP_03151946.1\| RNA polymerase, sigma-24 subunit, ECF subfamily [Clostridium thermoc... gi\|67849833, gi\|... - gi\|67916230\|ref\|ZP_00509948.1\| Sigma-70 region 2:Sigma-70 region 4 [Clostridium thermocellum ATCC 27...	158.0	[0..41]	[222..1]
gi\|114047841, gi... - gi\|78692147\|ref\|ZP_00856716.1\| RNA polymerase sigma-70 factor, ECF subfamily [Shewanella sp. MR-7], ...	157.0	[0..1]	[222..1]
gi\|117613240, gi... - gi\|78686373\|ref\|ZP_00851141.1\| RNA polymerase sigma-70 factor, ECF subfamily [Shewanella sp. ANA-3],...	157.0	[0..1]	[222..1]
gi\|221312309 - gi\|221312309\|ref\|ZP_03594114.1\| RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis ... gi\|221317242 - gi\|221317242\|ref\|ZP_03598536.1\| RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis ... gi\|221321505 - gi\|221321505\|ref\|ZP_03602799.1\| RNA polymerase sigma factor SigW [Bacillus subtilis subsp. subtilis ... SIGW_BACSU - RNA polymerase sigma factor sigW OS=Bacillus subtilis GN=sigW PE=2 SV=1 SIGW_BACSU - ECF RNA polymerase sigma factor SigW OS=Bacillus subtilis (strain 168) GN=sigW PE=1 SV=1	153.0	[0..41]	[219..1]
gi\|89160528, gi\|... - gi\|89209876\|ref\|ZP_01188270.1\| Sigma-70 region 2:Sigma-70 region 4 [Halothermothrix orenii H 168], g...	150.0	[0..40]	[219..1]
gi\|158140438, gi... - gi\|158320239\|ref\|YP_001512746.1\| ECF subfamily RNA polymerase sigma-24 factor [Alkaliphilus oremland...	148.0	[0..41]	[222..1]
gi\|52346529, gi\|... - gi\|52784027\|ref\|YP_089856.1\| RNA polymerase sigma factor SigW [Bacillus licheniformis ATCC 14580], g...	146.0	[0..41]	[219..1]
gi\|86146365, gi\|... - gi\|86146365\|ref\|ZP_01064689.1\| RNA polymerase sigma-70 factor [Vibrio sp. MED222], gi\|85835844\|gb\|EA... gi\|84390098, gi\|... - gi\|84390098\|ref\|ZP_00991360.1\| RNA polymerase sigma-70 factor [Vibrio splendidus 12B01], gi\|84376752...	146.0	[0..41]	[218..3]
gi\|88923028, gi\|... - gi\|88947512\|ref\|ZP_01150491.1\| RNA polymerase ECF-type sigma factor [Desulfotomaculum reducens MI-1]...	145.0	[0..41]	[222..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENFQSHLAQ NRYDRQLSPP IEMAMENDNH NLTADEHITD IDPLVSAIIK VANQRDKAAF  60
   61 GYLFSHFMPK IRAFGLQRLN QQGLAMDLVQ ETMTTVWTKS HLYNADKGSV ATWVFTIMRN 120
  121 QCFDMLRRVQ HNREDAFGDD IWPLYDVAVN QDNNPDHKLT AKLLAHLDAL PLAQRQVVQG 180
  181 IYMQELTQQE LADALKVPIG TIKSRLRLGL EKLKSFLETQ HD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	2q1zA
Description:	No description for 2q1zA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits