YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347859, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347859, gi|....

Description	E-value	Query Range	Subject Range
gi\|22295271, gi\|... - gi\|22299089\|ref\|NP_682336.1\| ribose-phosphate pyrophosphokinase [Thermosynechococcus elongatus BP-1]...	306.0	[0..3]	[299..89]
gi\|46134870, gi\|... - gi\|75908215\|ref\|YP_322511.1\| ribose-phosphate pyrophosphokinase [Anabaena variabilis ATCC 29413], gi...	305.0	[0..3]	[300..31]
gi\|25288326 - pir\|\|AF2389 ribose-phosphate pyrophosphokinase [imported] - Nostoc sp. (strain PCC 7120) KPRS_NOSS1 - Ribose-phosphate pyrophosphokinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=prs PE=3 SV=1	304.0	[0..3]	[300..23]
gi\|56751988, gi\|... - gi\|56751988\|ref\|YP_172689.1\| ribose-phosphate pyrophosphokinase [Synechococcus elongatus PCC 6301], ...	301.0	[0..3]	[300..23]
gi\|551633, gi\|541316 - gi\|551633\|dbj\|BAA03638.1\| phosphoribosylpyrophosphate synthetase [Synechococcus sp.], pir\|\|JN0886 ri... gi\|460896 - gi\|460896\|gb\|AAB29660.1\| phosphoribosylpyrophosphate synthetase, PRibPP synthetase, ATP:ribose-5-pho... KPRS_SYNE7 - Ribose-phosphate pyrophosphokinase OS=Synechococcus elongatus (strain PCC 7942) GN=prs PE=3 SV=1	301.0	[0..3]	[300..23]
KPRS1_ARATH - Ribose-phosphate pyrophosphokinase 1, chloroplastic OS=Arabidopsis thaliana GN=PRS1 PE=2 SV=2	301.0	[0..3]	[300..94]
gi\|23125111, gi\|... - gi\|23125111\|ref\|ZP_00107059.1\| COG0462: Phosphoribosylpyrophosphate synthetase [Nostoc punctiforme P...	301.0	[0..3]	[300..31]
gi\|145409803, gi... - gi\|82501190\|ref\|ZP_00886555.1\| Ribose-phosphate pyrophosphokinase [Caldicellulosiruptor saccharolyti...	301.0	[0..3]	[300..9]
gi\|77997002, gi\|... - gi\|78044887\|ref\|YP_359065.1\| ribose-phosphate pyrophosphokinase [Carboxydothermus hydrogenoformans Z...	299.0	[0..3]	[299..7]

Back

Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQRIQVSQQ IQTSQDVSKA QCLQADFYQL PAASDEANYR LFQFGAGENH VQLLVPPAKR  60
   61 VTLFFGYRGD HSIMQLLLLT DALRRNGAEQ IDLLLPYMPG ARQDRVCNVG EALSVKVYAS 120
  121 LINQQQYASV SVFDPHSDVT AALLDRVQVI DNHSFVAAIA AQLTGELVLV SPDAGANKKV 180
  181 FGLAKALQGM PVIRADKHRD VVNGHIIATE VFCDDLSGKT CLIVDDICAG GRTFIELAIK 240
  241 LKQKRAQSVI LIVSHYEDKA SESALREAGI DRLFCTDSLG VPTHISSEFC DCHAVLSYMN 300
  301 H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.69897
Match:	1dkrA
Description:	Phosphoribosylpyrophosphate synthetase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits