YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373539, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373539, gi|....

Description	E-value	Query Range	Subject Range
gi\|73538119, gi\|... - gi\|73538119\|ref\|YP_298486.1\| hypothetical protein Reut_B4289 [Ralstonia eutropha JMP134], gi\|7212145...	279.0	[0..3]	[338..5]
gi\|91779256, gi\|... - gi\|91779256\|ref\|YP_554464.1\| zinc carboxypeptidase-related protein [Burkholderia xenovorans LB400], ...	278.0	[0..1]	[338..7]
gi\|20864725, gi\|... - gi\|56550071\|ref\|NP_083982.1\| pancreatic carboxypeptidase B1 [Mus musculus], ref\|XP_130814.1\| carboxy...	276.0	[0..3]	[292..115]
gi\|89952535, gi\|... - gi\|90022935\|ref\|YP_528762.1\| putative carboxypeptidase [Saccharophagus degradans 2-40], gi\|89952535\|...	269.0	[0..11]	[338..37]
gi\|73975552 - gi\|73975552\|ref\|XP_532425.2\| PREDICTED: similar to Carboxypeptidase A2 precursor isoform 1 [Canis fa...	269.0	[0..5]	[277..121]
gi\|48767370, gi\|... - gi\|94313117\|ref\|YP_586326.1\| hypothetical protein Rmet_4190 [Ralstonia metallidurans CH34], gi\|93356...	267.0	[0..1]	[336..1]
gi\|114615933 - gi\|114615933\|ref\|XP_001156440.1\| PREDICTED: carboxypeptidase A2 (pancreatic) [Pan troglodytes]	266.0	[0..5]	[277..121]
gi\|30584205, gi\|... - gi\|60653443\|gb\|AAX29416.1\| carboxypeptidase A2 [synthetic construct], gi\|30584205\|gb\|AAP36351.1\| Hom...	265.0	[0..5]	[277..121]
gi\|30583645, gi\|... - gi\|30583645\|gb\|AAP36067.1\| carboxypeptidase A2 (pancreatic) [Homo sapiens], gi\|13937815\|gb\|AAH07009.... gi\|60656483, gi\|... - gi\|60656485\|gb\|AAX32806.1\| carboxypeptidase A2 [synthetic construct], gi\|60656483\|gb\|AAX32805.1\| car...	265.0	[0..5]	[277..121]

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Predicted Domain #1

Region A:
Residues: [1-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNIPFELDT LSQLIDTHHL KLKYQILADI AFRHEHFPLY SVELGVTEHL CPTVLFVGGV  60
   61 HGVERIGSQV ILALLNSLLQ RLTWDKHLQQ LLTEVRLAFV PVMNPVGLLL GTRGNGNEVD 120
  121 LMRNAPIESR EKVSFLVGGQ RLSPKLPWFR GLGGMELETA GLVAYVQQLL GQSTSLISLD 180
  181 AHSGFGLTDH IWFPYAHTKA PFENAHFIFY LKQLFDASYP HHGHYRLAPQ SQFYRTHGDI 240
  241 WDYLYGQHHI QDPQASVPFL PLTLEMGSWA WIKKNPRQIF NFAGFFNPQK THRHHRILRR 300
  301 HTVLMQFLME TAYARVLEGL TPEYLTQLTQ RAQQYWYRET LG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.39794
Match:	2nsmA
Description:	No description for 2nsmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits