YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373515, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373515, gi|....

Description	E-value	Query Range	Subject Range
gi\|219540109, gi... - gi\|219669849\|ref\|YP_002460284.1\| transposase IS200-family protein [Desulfitobacterium hafniense DCB-...	120.0	[0..1]	[80..63]
gi\|82496734, gi\|... - gi\|82496734\|ref\|ZP_00882299.1\| IS1004 transposase [Shewanella sp. MR-4], gi\|82405309\|gb\|EAP45984.1\| ...	120.0	[0..1]	[81..64]
gi\|77636273 - gi\|77636273\|ref\|ZP_00798348.1\| COG1943: Transposase and inactivated derivatives [Yersinia pestis Ang...	120.0	[0..1]	[79..120]
gi\|117612307, gi... - gi\|78686954\|ref\|ZP_00851714.1\| IS1004 transposase [Shewanella sp. ANA-3], gi\|78505352\|gb\|EAP18885.1\|...	119.0	[0..1]	[81..64]
gi\|14973111, gi\|... - gi\|15901458\|ref\|NP_346062.1\| IS200 family transposase [Streptococcus pneumoniae TIGR4], gi\|15900934\|... gi\|25302629, gi\|... - pir\|\|E95188 transposase, IS200 family [imported] - Streptococcus pneumoniae (strain TIGR4), pir\|\|A9...	118.0	[0..1]	[79..65]
gi\|39980854 - gi\|39980854\|ref\|NP_460910.2\| transposase for IS200 [Salmonella typhimurium LT2] gi\|205343070, gi... - gi\|205360131\|ref\|ZP_03224523.1\| transposase [Salmonella enterica subsp. enterica serovar Weltevreden... lcl\|NC_016856.1_... - [gene=tnpA_7] [protein=transposase for IS200] [protein_id=YP_005237924.1] [location=complement(20571...	118.0	[0..1]	[79..81]
gi\|26248994, gi\|... - gi\|26248994\|ref\|NP_755034.1\| hypothetical protein c3152 [Escherichia coli CFT073], gi\|26248470\|ref\|N... gi\|218706631, gi... - gi\|218707308\|ref\|YP_002414827.1\| transposase IS605 family, IS200 group [Escherichia coli UMN026], gi... gi\|170767762, gi... - gi\|170769996\|ref\|ZP_02904449.1\| transposase [Escherichia albertii TW07627], gi\|170769754\|ref\|ZP_0290...	117.0	[0..1]	[79..81]
gi\|56414979, gi\|... - gi\|56415441\|ref\|YP_152516.1\| transposase for insertion sequence element IS200 [Salmonella enterica s... gi\|197363908, gi... - gi\|197364371\|ref\|YP_002144008.1\| transposase for insertion sequence element IS200 [Salmonella enteri...	117.0	[0..1]	[79..64]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVIIPPKLS VSTLMGVLKG RSAIRLFNKF PHVRKKQWGN SFWARGYFVD TVGVNEEIIR  60
   61 RYVRHQDKQD QEHEAQLSLQ MM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.154902
Match:	2ec2A
Description:	No description for 2ec2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits