YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347808, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	315 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347808, gi|....

Description	E-value	Query Range	Subject Range
gi\|110550987, gi... - gi\|126178737\|ref\|YP_001046702.1\| magnesium and cobalt transport protein CorA [Methanoculleus marisni...	281.0	[0..2]	[315..21]
gi\|221564892, gi... - gi\|222055603\|ref\|YP_002537965.1\| magnesium and cobalt transport protein CorA [Geobacter sp. FRC-32],...	270.0	[0..2]	[315..31]
gi\|67546254, gi\|... - gi\|67546254\|ref\|ZP_00424169.1\| Magnesium and cobalt transport protein CorA [Burkholderia vietnamiens...	269.0	[0..1]	[315..48]
gi\|25295831 - pir\|\|AG2319 hypothetical protein all4110 [imported] - Nostoc sp. (strain PCC 7120) gi\|17231602, gi\|... - gi\|17231602\|ref\|NP_488150.1\| hypothetical protein all4110 [Nostoc sp. PCC 7120], gi\|17133245\|dbj\|BAB...	268.0	[0..2]	[315..42]
gi\|53764972, gi\|... - gi\|75907018\|ref\|YP_321314.1\| magnesium/cobalt transporter CorA [Anabaena variabilis ATCC 29413], gi\|...	264.0	[0..2]	[315..42]
gi\|21228742, gi\|... - gi\|21228742\|ref\|NP_634664.1\| magnesium/cobalt transporter CorA [Methanosarcina mazei Go1], gi\|209072...	263.0	[0..1]	[315..32]
gi\|17431136 - gi\|17431136\|emb\|CAD17816.1\| probable magnesium and cobalt transport transmembrane protein [Ralstonia... gi\|17548886 - gi\|17548886\|ref\|NP_522226.1\| magnesium/cobalt transporter CorA [Ralstonia solanacearum GMI1000]	263.0	[0..1]	[315..4]
gi\|20090573, gi\|... - gi\|20090573\|ref\|NP_616648.1\| magnesium Mg(2+)/cobalt Co(2+) transport protein [Methanosarcina acetiv...	262.0	[0..2]	[315..33]
gi\|72117184, gi\|... - gi\|73539771\|ref\|YP_294291.1\| Mg2+ transporter protein, CorA-like [Ralstonia eutropha JMP134], gi\|721...	262.0	[0..10]	[315..17]
gi\|77920304, gi\|... - gi\|77920304\|ref\|YP_358119.1\| magnesium and cobalt transport protein CorA [Pelobacter carbinolicus DS...	261.0	[0..7]	[315..55]

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Predicted Domain #1

Region A:
Residues: [1-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITAYIYENR QLTVTEINIQ DSIPASTIWL DLYKPDDAER EWLSHFSVEE VPDEEDINEI  60
   61 EASARFYQNS DGLHINSLFP QRVGQDVRGV NVSFNLRTNF LLTIREEDVG LIRLLRNYLR 120
  121 LGRLEVSTPQ ELFLELFNLK VDYLSDLIED VYTVLENVGE QVFDSEELDD VFKLITLQED 180
  181 SNGKIRLSLL DTQRSLRYMQ RYYRGQLSDE HLKDLREMLS DIESLMPHSQ FIFDKLNFLL 240
  241 DAAMGFSGLQ QNKIIKIFSV AAVVFLPPTL IASSYGMNFN GMPELQWQYG YPMAILMMLA 300
  301 SAAGTYFFFK RKHWL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.69897
Match:	2bbjA
Description:	Crystal structure of the CorA Mg2+ transporter
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits