YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373494, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	939 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373494, gi|....

Description	E-value	Query Range	Subject Range
gi\|54308241, gi\|... - gi\|54308241\|ref\|YP_129261.1\| 2-oxoglutarate dehydrogenase E1 component [Photobacterium profundum SS9...	974.0	[0..1]	[939..1]
gi\|90327489, gi\|... - gi\|90411599\|ref\|ZP_01219609.1\| putative 2-oxoglutarate dehydrogenase, E1 component [Photobacterium p...	971.0	[0..1]	[939..1]
gi\|90580054, gi\|... - gi\|90580054\|ref\|ZP_01235862.1\| putative 2-oxoglutarate dehydrogenase, E1 component [Vibrio angustum ...	967.0	[0..1]	[939..1]
gi\|89073520, gi\|... - gi\|89073520\|ref\|ZP_01160043.1\| putative 2-oxoglutarate dehydrogenase, E1 component [Photobacterium s...	966.0	[0..1]	[939..1]
gi\|85834572, gi\|... - gi\|86147661\|ref\|ZP_01065970.1\| 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component [V...	962.0	[0..1]	[939..1]
gi\|28897621, gi\|... - gi\|28897621\|ref\|NP_797226.1\| alpha-ketoglutarate decarboxylase [Vibrio parahaemolyticus RIMD 2210633... gi\|149748006, gi... - gi\|153838588\|ref\|ZP_01991255.1\| 2-oxoglutarate dehydrogenase, E1 component [Vibrio parahaemolyticus ... gi\|28805833 - gi\|28805833\|dbj\|BAC59110.1\| 2-oxoglutarate dehydrogenase, E1 component [Vibrio parahaemolyticus RIMD...	962.0	[0..1]	[939..1]
gi\|194539197, gi... - gi\|75854796\|ref\|ZP_00762469.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com...	961.0	[0..1]	[939..1]
gi\|84375906, gi\|... - gi\|84393478\|ref\|ZP_00992234.1\| 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component [V...	961.0	[0..1]	[939..1]
gi\|167399982, gi... - gi\|167399982\|ref\|ZP_02305500.1\| 2-oxoglutarate dehydrogenase, E1 component [Yersinia pestis biovar A... gi\|166207041, gi... - gi\|166211270\|ref\|ZP_02237305.1\| 2-oxoglutarate dehydrogenase, E1 component [Yersinia pestis biovar A... gi\|167424012, gi... - gi\|167424012\|ref\|ZP_02315765.1\| 2-oxoglutarate dehydrogenase, E1 component [Yersinia pestis biovar M... gi\|167419782, gi... - gi\|167419782\|ref\|ZP_02311535.1\| 2-oxoglutarate dehydrogenase, E1 component [Yersinia pestis biovar O... gi\|169751724, gi... - gi\|170025190\|ref\|YP_001721695.1\| 2-oxoglutarate dehydrogenase E1 component [Yersinia pseudotuberculo... gi\|167468940 - gi\|167468940\|ref\|ZP_02333644.1\| 2-oxoglutarate dehydrogenase, E1 component [Yersinia pestis FV-1] gi\|186894544, gi... - gi\|186894544\|ref\|YP_001871656.1\| 2-oxoglutarate dehydrogenase E1 component [Yersinia pseudotuberculo... gi\|25284474 - pir\|\|AI0136 oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) E1 component [imported] - Yersinia p... gi\|165989568, gi... - gi\|166011620\|ref\|ZP_02232518.1\| 2-oxoglutarate dehydrogenase, E1 component [Yersinia pestis biovar A... gi\|165924466, gi... - gi\|165924466\|ref\|ZP_02220298.1\| 2-oxoglutarate dehydrogenase, E1 component [Yersinia pestis biovar O... gi\|77636428, gi\|... - gi\|77636428\|ref\|ZP_00798502.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|77632106, gi\|... - gi\|77632106\|ref\|ZP_00794692.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... Q66DA2\|Q66DA2_YERPS - 2-oxoglutarate dehydrogenase E1 component - Yersinia pseudotuberculosis gi\|45435735, gi\|... - gi\|45440877\|ref\|NP_992416.1\| alpha-ketoglutarate decarboxylase [Yersinia pestis biovar Microtus str.... gi\|229697415, gi... - gi\|229841049\|ref\|ZP_04461208.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Yersinia pestis bio... gi\|22126943, gi\|... - gi\|22126943\|ref\|NP_670366.1\| alpha-ketoglutarate decarboxylase [Yersinia pestis KIM], gi\|21959983\|gb... gi\|229689500, gi... - gi\|229843153\|ref\|ZP_04463299.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Yersinia pestis bio... gi\|115346892, gi... - gi\|218928281\|ref\|YP_002346156.1\| 2-oxoglutarate dehydrogenase E1 component [Yersinia pestis CO92], g... gi\|149291261, gi... - gi\|149366887\|ref\|ZP_01888921.1\| 2-oxoglutarate dehydrogenase E1 component [Yersinia pestis CA88-4125... gi\|229893990, gi... - gi\|229893990\|ref\|ZP_04509176.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Yersinia pestis Pes... gi\|51595491, gi\|... - gi\|51595491\|ref\|YP_069682.1\| alpha-ketoglutarate decarboxylase [Yersinia pseudotuberculosis IP 32953... gi\|145599849, gi... - gi\|145599849\|ref\|YP_001163925.1\| alpha-ketoglutarate decarboxylase [Yersinia pestis Pestoides F], gi... gi\|165913781, gi... - gi\|89105202\|ref\|ZP_01177726.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|108806588, gi... - gi\|108806588\|ref\|YP_650504.1\| alpha-ketoglutarate decarboxylase [Yersinia pestis Antiqua], gi\|108778... gi\|229903486, gi... - gi\|229903486\|ref\|ZP_04518599.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Yersinia pestis Nep...	960.0	[0..1]	[939..1]
gi\|82543153, gi\|... - gi\|82543153\|ref\|YP_407100.1\| alpha-ketoglutarate decarboxylase [Shigella boydii Sb227], gi\|81244564\|...	960.0	[0..1]	[939..1]

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Predicted Domain #1

Region A:
Residues: [1-939]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQGIMKAWL ESSHLSGANS TYVEEMYEAY QEDPQSVSDD WRAVFDNLPP VNGASKDAPE  60
   61 AAHSKVRDYF RSLAMEGRHK SAARVTDPEL DAKQVKVLQL INAHRFRGHQ GANLDPLELW 120
  121 KREPVADLDP AFHGLTKEDM EREFNTGSFA HGGETMKLAD LVKALKATYC GSIGAEYMHI 180
  181 TDTDEKRWIQ QRLEPSLGKA NYDKSVKTRI LEGLNAAEGI EKYLGAKFPG AKRFSLEGGD 240
  241 ALVPMMREII YRAGEAGTKE IVVGMAHRGR LNVLVNVLGK RPAELFDEFA GKHADTHGSG 300
  301 DVKYHQGFSS DFETPGGNVH LALAFNPSHL EIVNPVVMGS VRARQDRRGC KDGLQVMPIT 360
  361 IHGDSAITGQ GIVQETFNMS QTRGFKVGGS IRIVVNNQVG FTTSNHYDVR STEYCTDIAK 420
  421 MVQAPIFHVN SDDPEAVAFV AQLAVDYRNE FKRDVVIDLV CYRRHGHNEA DEPSATQPLM 480
  481 YAKIKKHPTP RKIYADKLIA ENTIAADDVT GMINTYRDAL DQGDCVVKEW RPMTLHTVDW 540
  541 TPYIGREWDE AYDASLPIER LQKLADKLSY VPESHSLQSR VAKIYSDRVA MAKGEKPLDW 600
  601 GFAETLAYAT ILEDKQRVRI TGQDSGRGTF FHRHAVLHNQ NDATTYLPLR NISDGQGPID 660
  661 ITDSVLSEAS VLAFEYGYAT AEPSGLAIWE AQFGDFANCA QVVIDQFLSS GEQKWGRLCG 720
  721 LTMLLPHGYE GQGPEHSSAR LERFLQLCAN HNMQVCVPST PAQVYHMLRR QVVRPMRRPL 780
  781 VVMSPKSLLR HPLAVSSMDE LANGSFQNVI GEIDTLEASK VDRVVFCSGK VYFELLEKRR 840
  841 KENINNIAII RVEQLYPFPH EEMVAALADY QHVKDFVWCQ EEPQNQGAWY SSQHHFWAAI 900
  901 PAGAKLTYAG REASAAPACG YPELHAHQQE SLVNSALKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2jgdB
Description:	No description for 2jgdB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits