YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347757, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	508 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347757, gi|....

Description	E-value	Query Range	Subject Range
gi\|52348807, gi\|... - gi\|52786305\|ref\|YP_092134.1\| 6-phosphogluconate dehydrogenase [Bacillus licheniformis ATCC 14580], g...	505.0	[0..5]	[498..1]
gi\|221323828 - gi\|221323828\|ref\|ZP_03605122.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD_BACSU - 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating OS=Bacillus subtilis (strain 16... gi\|221319552 - gi\|221319552\|ref\|ZP_03600846.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... gi\|221314629 - gi\|221314629\|ref\|ZP_03596434.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD2_BACSU - 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4	499.0	[0..5]	[498..1]
gi\|56420879, gi\|... - gi\|56420879\|ref\|YP_148197.1\| 6-phosphogluconate dehydrogenase [Geobacillus kaustophilus HTA426], gi\|...	498.0	[0..5]	[498..1]
gi\|89099010, gi\|... - gi\|89099010\|ref\|ZP_01171889.1\| 6-phosphogluconate dehydrogenase [Bacillus sp. NRRL B-14911], gi\|8908...	497.0	[0..5]	[498..1]
gi\|67861721, gi\|... - gi\|67931108\|ref\|ZP_00524274.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Solibacter usitatu...	495.0	[0..4]	[504..1]
gi\|23097640, gi\|... - gi\|23097640\|ref\|NP_691106.1\| 6-phosphogluconate dehydrogenase [Oceanobacillus iheyensis HTE831], gi\|...	492.0	[0..6]	[498..1]
gi\|52424068, gi\|... - gi\|52424068\|ref\|YP_087205.1\| 6-phosphogluconate dehydrogenase [Mannheimia succiniciproducens MBEL55E...	492.0	[0..4]	[505..1]
gi\|77975882, gi\|... - gi\|77975882\|ref\|ZP_00831416.1\| COG0362: 6-phosphogluconate dehydrogenase [Yersinia frederiksenii ATC...	491.0	[0..5]	[498..1]
gi\|194436277, gi... - gi\|83588030\|ref\|ZP_00926655.1\| COG0362: 6-phosphogluconate dehydrogenase [Escherichia coli 101-1], g...	491.0	[0..5]	[498..1]
gi\|46143450 - gi\|46143450\|ref\|ZP_00135245.2\| COG0362: 6-phosphogluconate dehydrogenase [Actinobacillus pleuropneum...	491.0	[0..2]	[505..16]

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Predicted Domain #1

Region A:
Residues: [1-508]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNHSNLNDI GVIGLGVMGK NLALNIADNQ YRVSVFDLDP VKVNGVLQQE KQERVGQELR  60
   61 ITGCANLSEM LASLTKPRIL VLSVPAGAPV DGVCAALISA GIEADDIVID TGNSLWTDTV 120
  121 EREQHYQGQF IFFSSAVSGG EVGARFGPSL MPSGDLGAWQ HVAPIWKAIA AKVNPQTGLP 180
  181 IERFEPGNPV TEGEPCTTYI GPAGAGHYVK MVHNGIEYAD MQLICEAYQL LHDGLGMSAA 240
  241 EVGEVFERWN QGSLNSYLMG ISAEVLKQAD PLTGKPLVEM ILDKAGQKGT GLWTAVSSLQ 300
  301 IGCPAPTIAE AVYARAVSTQ KSLRVELSKK LAGPLSPAMD ENQKANLIDA LESALYCAKV 360
  361 CCYAQGFQLM AMTALEQKWQ LDFAEIAKIW RAGCIIRATF LQSITQAYQA DANLSCLLMA 420
  421 DTFASTLSEK QTEWRIAVAA AIMQGIPVPC ISSALAYYDS YRSETLPANL LQGQRDFFGA 480
  481 HTFERLDKPA GEKYHLDWSA QERVLIKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	132.0
Match:	2iypA
Description:	No description for 2iypA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits