YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347748, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347748, gi|....

Description	E-value	Query Range	Subject Range
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	281.0	[0..23]	[281..2]
gi\|241218800, gi... - gi\|241769557\|ref\|ZP_04766976.1\| Enoyl-CoA hydratase/isomerase [Sulfolobus solfataricus 98/2], gi\|241... gi\|25291790 - pir\|\|A90436 enoyl CoA hydratase (paaF-7) [imported] - Sulfolobus solfataricus gi\|13815932, gi\|... - gi\|15899349\|ref\|NP_343954.1\| enoyl CoA hydratase (paaF-7) [Sulfolobus solfataricus P2], gi\|13815932\|...	273.0	[0..23]	[280..8]
gi\|28204455, gi\|... - gi\|28212012\|ref\|NP_782956.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium tetani E88], gi\|28204455\|...	270.0	[0..23]	[281..2]
gi\|116062799, gi... - gi\|118431474\|ref\|NP_147973.2\| 3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA dehydratase [Aero...	265.0	[0..22]	[281..411]
gi\|88926146, gi\|... - gi\|88944140\|ref\|ZP_01147473.1\| putative crotonase [Desulfotomaculum reducens MI-1], gi\|88926146\|gb\|E...	264.0	[0..23]	[281..2]
gi\|77997022, gi\|... - gi\|78044907\|ref\|YP_360429.1\| 3-hydroxybutyryl-CoA dehydratase [Carboxydothermus hydrogenoformans Z-2...	264.0	[0..23]	[280..2]
gi\|7428375 - pir\|\|C69370 probable enoyl-CoA hydratase (EC 4.2.1.17) fad-3 - Archaeoglobus fulgidus gi\|2649635, gi\|1... - gi\|2649635\|gb\|AAB90280.1\| enoyl-CoA hydratase (fad-3) [Archaeoglobus fulgidus DSM 4304], gi\|11498568...	263.0	[0..24]	[279..1]
gi\|18145966, gi\|... - gi\|18311283\|ref\|NP_563217.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens str. 13], gi\|... gi\|110673862, gi... - gi\|110799215\|ref\|YP_696975.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens ATCC 13124],... gi\|182625533, gi... - gi\|182625533\|ref\|ZP_02953304.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens D str. JGS... gi\|170715197, gi... - gi\|170715197\|gb\|EDT27379.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens CPE str. F4969...	263.0	[0..26]	[281..5]
gi\|110683900, gi... - gi\|110803399\|ref\|YP_699562.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens SM101], gi\|1...	261.0	[0..26]	[281..5]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTQHQNTS TQSLGHLQHA LGHLQHVSYA LDNGVGELIL NRAEVHNAFD EVMISEMIAV  60
   61 LGYFAERQDC KLLLLKANGK NFSAGADLNW MRKQAKMDFD QNLNDAKALA KLMQDLDTFP 120
  121 KPTIALVQGA AFGGALGLIC ASDIAIATER ASFCLSEVKL GLIPAVISPY VARAMGNRAS 180
  181 RRYMLTAERF DAQTALKLNV IHEINDDLEA AAQPIITALL ANSPQGMAWV KTLLTRLEDG 240
  241 VIDQDTIDYT SERIARIRVS DEGQEGLNAF FEKRQPNWHT PTDTQGVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.154902
Match:	2iexA
Description:	No description for 2iexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits