YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347747, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	694 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347747, gi|....

Description	E-value	Query Range	Subject Range
gi\|109043037 - gi\|109043037\|ref\|XP_001096717.1\| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 1 (alp...	554.0	[0..1]	[692..111]
gi\|114590613 - gi\|114590613\|ref\|XP_516898.2\| PREDICTED: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Pan trogl...	551.0	[0..1]	[692..170]
gi\|74003228 - gi\|74003228\|ref\|XP_535817.2\| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) ...	547.0	[0..12]	[692..49]
gi\|62089054 - gi\|62089054\|dbj\|BAD92974.1\| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) variant [Homo sapiens]	547.0	[0..5]	[692..58]
gi\|49523253, gi\|... - gi\|55742190\|ref\|NP_001006691.1\| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Xenopus (Silurana)... gi\|55742190 - ref\|NP_001006691.1\| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Xenopus tropicalis]	541.0	[0..8]	[693..39]
gi\|49256076, gi\|... - gi\|49256076\|gb\|AAH74151.1\| MGC81895 protein [Xenopus laevis], gi\|148229681\|ref\|NP_001086068.1\| MGC81...	540.0	[0..8]	[683..39]
MCCA_RAT - Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Mccc1 PE=1 SV=1	539.0	[0..5]	[689..38]

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Predicted Domain #1

Region A:
Residues: [1-694]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTKQMLTNS MFTKLLIANR GEIACRIIKT AQAMGVRTVA LYSDADKNAR HVAMADESFY  60
   61 LGGSAPADSY LKGDLIIAIA KKAQAQAIHP GYGFLSENAD FARKCEAAGI VFVGPGSDAI 120
  121 DAMGSKSAAK AIMTAAQVPL VPGYHGDDQT DATLKAEALK IGFPMLIKAA YGGGGKGMRI 180
  181 VEHEGEIMDA INSARREAAS SFGNDKLLME RYLRQPRHVE VQVFADTFGN AIYLSDRDCS 240
  241 IQRRHQKVVE EAPAPGLSDE LRAQMGEAAV AAAKAIDYVG AGTIEFLLDT DNSFYFMEMN 300
  301 TRLQVEHPVT EMVTGQDLVK WQLMVASGQP LPLKQDEVRI HGHAFEVRIY AEDPQNEFLP 360
  361 ASGKLNFLRE PEQSKYVRID SGIRENDVIS NFYDPMIAKL IVWDESRPRA LQRLVHALES 420
  421 YQISGLKHNI EFLANIAEHP AFAKADFSTD FINRYGDALI GSASSEADTA LAFAALYQVL 480
  481 ARKEAAKAQA INSADPDSPW GQVSGFRLNS VSQHSIALLD DAHELQQLVL LDFGDHYQLS 540
  541 HNRSSQHQLS QSAADGQVSK SLSGELKQDL LLAEINGHKS KVPVSAQGDD FTLFLPSGSY 600
  601 HFRAVKTQVV EAESSNEDKL KAPMNGTVVT HLVDVGAEVK AGQGLLVMEA MKMEYTIEAP 660
  661 FDGIVTEFYF KAGELVSDGA VLLHVEPKAQ SEEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	135.0
Match:	2qf7A
Description:	No description for 2qf7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits